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feat: vep annotation (dockerised + google batch + airflow) #608

Merged
merged 24 commits into from
Jul 4, 2024
Merged

feat: vep annotation (dockerised + google batch + airflow) #608

merged 24 commits into from
Jul 4, 2024

Commits on May 15, 2024

  1. feat: custom dockerfile to run ensembl vep

    @d0choa
    d0choa committed May 15, 2024
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  2. ci: automate vep image build and artifact registry

    @d0choa
    d0choa committed May 15, 2024
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  3. chore: update airflow google operators (not required)

    @d0choa
    d0choa committed May 15, 2024
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  4. feat: working version of google batch airflow vep job

    @d0choa
    d0choa committed May 15, 2024
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  5. Merge branch 'dev' into dsdo_airflow_batch_vep

    @d0choa
    d0choa authored May 15, 2024
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  6. feat: working version of google batch airflow vep job

    @d0choa
    d0choa committed May 15, 2024
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  7. chore: rename jobs

    @d0choa
    d0choa committed May 15, 2024
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  8. feat(VEP): adding CADD plugin

    @DSuveges
    DSuveges committed May 15, 2024
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Commits on May 16, 2024

  1. feat: local loftee file

    @d0choa
    d0choa committed May 16, 2024
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  2. feat: local loftee file

    @d0choa
    d0choa committed May 16, 2024
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  3. feat: working with input bucket full of input files

    @d0choa
    d0choa committed May 16, 2024
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Commits on May 17, 2024

  1. feat: prevent writing html

    @d0choa
    d0choa committed May 17, 2024
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  2. Merge branch 'dev' into dsdo_airflow_batch_vep

    @d0choa
    d0choa committed May 17, 2024
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Commits on Jun 17, 2024

  1. fix: minor adjustments to retry strategy

    @d0choa
    d0choa committed Jun 17, 2024
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Commits on Jun 25, 2024

  1. chore: update with dev

    @DSuveges
    DSuveges committed Jun 25, 2024
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  2. feat(airflow): separating mounting points for input/output and cache

    @DSuveges
    DSuveges committed Jun 25, 2024
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  3. fix: typo in airflow dag

    @DSuveges
    DSuveges committed Jun 25, 2024
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  4. Merge branch 'dev' into dsdo_airflow_batch_vep

    @DSuveges
    DSuveges authored Jun 25, 2024
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  5. fix: pre-commit pain

    @DSuveges
    DSuveges committed Jun 25, 2024
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  6. Merge branch 'dsdo_airflow_batch_vep' of https://github.com/opentarge… 

    …ts/gentropy into dsdo_airflow_batch_vep
    @DSuveges
    DSuveges committed Jun 25, 2024
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  7. chore: rename airflow dag file

    @DSuveges
    DSuveges committed Jun 25, 2024
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Commits on Jun 26, 2024

  1. Merge branch 'dev' into dsdo_airflow_batch_vep

    @project-defiant
    project-defiant authored Jun 26, 2024
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Commits on Jun 30, 2024

  1. Merge branch 'dev' into dsdo_airflow_batch_vep

    @DSuveges
    DSuveges authored Jun 30, 2024
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Commits on Jul 4, 2024

  1. Merge branch 'dev' into dsdo_airflow_batch_vep

    @DSuveges
    DSuveges authored Jul 4, 2024
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