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Unknown committed Oct 19, 2023
1 parent f6df41d commit d9af02d
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Showing 4 changed files with 21 additions and 5 deletions.
4 changes: 2 additions & 2 deletions python_api/dataset/gene_index/index.html
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Expand Up @@ -101,7 +101,7 @@
<span class=sd> &quot;&quot;&quot;</span>
<span class=k>return</span> <span class=bp>self</span><span class=o>.</span><span class=n>df</span><span class=o>.</span><span class=n>select</span><span class=p>(</span>
<span class=n>f</span><span class=o>.</span><span class=n>explode</span><span class=p>(</span>
<span class=n>f</span><span class=o>.</span><span class=n>array_union</span><span class=p>(</span><span class=n>f</span><span class=o>.</span><span class=n>array</span><span class=p>(</span><span class=s2>&quot;approvedSymbol&quot;</span><span class=p>),</span> <span class=n>f</span><span class=o>.</span><span class=n>col</span><span class=p>(</span><span class=s2>&quot;obsoleteSymbols.label&quot;</span><span class=p>))</span>
<span class=n>f</span><span class=o>.</span><span class=n>array_union</span><span class=p>(</span><span class=n>f</span><span class=o>.</span><span class=n>array</span><span class=p>(</span><span class=s2>&quot;approvedSymbol&quot;</span><span class=p>),</span> <span class=n>f</span><span class=o>.</span><span class=n>col</span><span class=p>(</span><span class=s2>&quot;obsoleteSymbols&quot;</span><span class=p>))</span>
<span class=p>)</span><span class=o>.</span><span class=n>alias</span><span class=p>(</span><span class=s2>&quot;geneSymbol&quot;</span><span class=p>),</span>
<span class=s2>&quot;*&quot;</span><span class=p>,</span>
<span class=p>)</span>
Expand Down Expand Up @@ -185,7 +185,7 @@
<span class=sd> &quot;&quot;&quot;</span>
<span class=k>return</span> <span class=bp>self</span><span class=o>.</span><span class=n>df</span><span class=o>.</span><span class=n>select</span><span class=p>(</span>
<span class=n>f</span><span class=o>.</span><span class=n>explode</span><span class=p>(</span>
<span class=n>f</span><span class=o>.</span><span class=n>array_union</span><span class=p>(</span><span class=n>f</span><span class=o>.</span><span class=n>array</span><span class=p>(</span><span class=s2>&quot;approvedSymbol&quot;</span><span class=p>),</span> <span class=n>f</span><span class=o>.</span><span class=n>col</span><span class=p>(</span><span class=s2>&quot;obsoleteSymbols.label&quot;</span><span class=p>))</span>
<span class=n>f</span><span class=o>.</span><span class=n>array_union</span><span class=p>(</span><span class=n>f</span><span class=o>.</span><span class=n>array</span><span class=p>(</span><span class=s2>&quot;approvedSymbol&quot;</span><span class=p>),</span> <span class=n>f</span><span class=o>.</span><span class=n>col</span><span class=p>(</span><span class=s2>&quot;obsoleteSymbols&quot;</span><span class=p>))</span>
<span class=p>)</span><span class=o>.</span><span class=n>alias</span><span class=p>(</span><span class=s2>&quot;geneSymbol&quot;</span><span class=p>),</span>
<span class=s2>&quot;*&quot;</span><span class=p>,</span>
<span class=p>)</span>
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20 changes: 18 additions & 2 deletions python_api/datasource/open_targets/target/index.html
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Expand Up @@ -53,7 +53,11 @@
<span class=normal>62</span>
<span class=normal>63</span>
<span class=normal>64</span>
<span class=normal>65</span></pre></div></td><td class=code><div><pre><span></span><code><span class=k>class</span> <span class=nc>OpenTargetsTarget</span><span class=p>:</span>
<span class=normal>65</span>
<span class=normal>66</span>
<span class=normal>67</span>
<span class=normal>68</span>
<span class=normal>69</span></pre></div></td><td class=code><div><pre><span></span><code><span class=k>class</span> <span class=nc>OpenTargetsTarget</span><span class=p>:</span>
<span class=w> </span><span class=sd>&quot;&quot;&quot;Parser for OTPlatform target dataset.&quot;&quot;&quot;</span>

<span class=nd>@staticmethod</span>
Expand Down Expand Up @@ -95,6 +99,10 @@
<span class=k>return</span> <span class=n>GeneIndex</span><span class=p>(</span>
<span class=n>_df</span><span class=o>=</span><span class=n>target_index</span><span class=o>.</span><span class=n>select</span><span class=p>(</span>
<span class=n>f</span><span class=o>.</span><span class=n>coalesce</span><span class=p>(</span><span class=n>f</span><span class=o>.</span><span class=n>col</span><span class=p>(</span><span class=s2>&quot;id&quot;</span><span class=p>),</span> <span class=n>f</span><span class=o>.</span><span class=n>lit</span><span class=p>(</span><span class=s2>&quot;unknown&quot;</span><span class=p>))</span><span class=o>.</span><span class=n>alias</span><span class=p>(</span><span class=s2>&quot;geneId&quot;</span><span class=p>),</span>
<span class=s2>&quot;approvedSymbol&quot;</span><span class=p>,</span>
<span class=s2>&quot;approvedName&quot;</span><span class=p>,</span>
<span class=s2>&quot;biotype&quot;</span><span class=p>,</span>
<span class=n>f</span><span class=o>.</span><span class=n>col</span><span class=p>(</span><span class=s2>&quot;obsoleteSymbols.label&quot;</span><span class=p>)</span><span class=o>.</span><span class=n>alias</span><span class=p>(</span><span class=s2>&quot;obsoleteSymbols&quot;</span><span class=p>),</span>
<span class=n>f</span><span class=o>.</span><span class=n>coalesce</span><span class=p>(</span><span class=n>f</span><span class=o>.</span><span class=n>col</span><span class=p>(</span><span class=s2>&quot;genomicLocation.chromosome&quot;</span><span class=p>),</span> <span class=n>f</span><span class=o>.</span><span class=n>lit</span><span class=p>(</span><span class=s2>&quot;unknown&quot;</span><span class=p>))</span><span class=o>.</span><span class=n>alias</span><span class=p>(</span>
<span class=s2>&quot;chromosome&quot;</span>
<span class=p>),</span>
Expand Down Expand Up @@ -135,7 +143,11 @@
<span class=normal>62</span>
<span class=normal>63</span>
<span class=normal>64</span>
<span class=normal>65</span></pre></div></td><td class=code><div><pre><span></span><code><span class=nd>@classmethod</span>
<span class=normal>65</span>
<span class=normal>66</span>
<span class=normal>67</span>
<span class=normal>68</span>
<span class=normal>69</span></pre></div></td><td class=code><div><pre><span></span><code><span class=nd>@classmethod</span>
<span class=k>def</span> <span class=nf>as_gene_index</span><span class=p>(</span><span class=bp>cls</span><span class=p>:</span> <span class=nb>type</span><span class=p>[</span><span class=n>GeneIndex</span><span class=p>],</span> <span class=n>target_index</span><span class=p>:</span> <span class=n>DataFrame</span><span class=p>)</span> <span class=o>-&gt;</span> <span class=n>GeneIndex</span><span class=p>:</span>
<span class=w> </span><span class=sd>&quot;&quot;&quot;Initialise GeneIndex from source dataset.</span>

Expand All @@ -148,6 +160,10 @@
<span class=k>return</span> <span class=n>GeneIndex</span><span class=p>(</span>
<span class=n>_df</span><span class=o>=</span><span class=n>target_index</span><span class=o>.</span><span class=n>select</span><span class=p>(</span>
<span class=n>f</span><span class=o>.</span><span class=n>coalesce</span><span class=p>(</span><span class=n>f</span><span class=o>.</span><span class=n>col</span><span class=p>(</span><span class=s2>&quot;id&quot;</span><span class=p>),</span> <span class=n>f</span><span class=o>.</span><span class=n>lit</span><span class=p>(</span><span class=s2>&quot;unknown&quot;</span><span class=p>))</span><span class=o>.</span><span class=n>alias</span><span class=p>(</span><span class=s2>&quot;geneId&quot;</span><span class=p>),</span>
<span class=s2>&quot;approvedSymbol&quot;</span><span class=p>,</span>
<span class=s2>&quot;approvedName&quot;</span><span class=p>,</span>
<span class=s2>&quot;biotype&quot;</span><span class=p>,</span>
<span class=n>f</span><span class=o>.</span><span class=n>col</span><span class=p>(</span><span class=s2>&quot;obsoleteSymbols.label&quot;</span><span class=p>)</span><span class=o>.</span><span class=n>alias</span><span class=p>(</span><span class=s2>&quot;obsoleteSymbols&quot;</span><span class=p>),</span>
<span class=n>f</span><span class=o>.</span><span class=n>coalesce</span><span class=p>(</span><span class=n>f</span><span class=o>.</span><span class=n>col</span><span class=p>(</span><span class=s2>&quot;genomicLocation.chromosome&quot;</span><span class=p>),</span> <span class=n>f</span><span class=o>.</span><span class=n>lit</span><span class=p>(</span><span class=s2>&quot;unknown&quot;</span><span class=p>))</span><span class=o>.</span><span class=n>alias</span><span class=p>(</span>
<span class=s2>&quot;chromosome&quot;</span>
<span class=p>),</span>
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2 changes: 1 addition & 1 deletion search/search_index.json
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Binary file modified sitemap.xml.gz
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