feat: vep annotation (dockerised + google batch + airflow) #1044

	name: Checks

	"on":
	pull_request:

	env:
	PYTHON_VERSION_DEFAULT: "3.10.8"

	jobs:
	test:
	runs-on: ubuntu-latest
	steps:
	- uses: actions/checkout@v4
	with:
	fetch-depth: 1
	- name: Set up Python
	uses: actions/setup-python@v5
	with:
	python-version: 3.10.8
	- name: Install and configure Poetry
	uses: snok/install-poetry@v1
	with:
	virtualenvs-create: true
	virtualenvs-in-project: true
	installer-parallel: true
	- name: Load cached venv
	id: cached-poetry-dependencies
	uses: actions/cache@v4
	with:
	path: .venv
	key: venv-${{ runner.os }}-${{ env.PYTHON_VERSION_DEFAULT }}-${{ hashFiles('**/poetry.lock') }}
	- name: Validate project dependencies
	run: poetry check
	- name: Install dependencies
	if: steps.cached-poetry-dependencies.outputs.cache-hit != 'true'
	run: poetry install --no-interaction --no-root
	- name: Install library
	run: poetry install --no-interaction
	- name: Check dependencies
	run: poetry run deptry .
	- name: Run tests
	run: poetry run pytest
	- name: Upload coverage to Codecov
	uses: codecov/codecov-action@v4
	with:
	token: ${{ secrets.CODECOV_TOKEN }}
	files: ./coverage.xml
	fail_ci_if_error: false
	verbose: true

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