analysis: Remove analysis framework from Oskar. #21

oskar-analysis/src/main/java/org/opencb/oskar/analysis/OskarExecutor.java

@@ -0,0 +1,38 @@
+package org.opencb.oskar.analysis;
+
+import org.opencb.commons.datastore.core.ObjectMap;
+import org.opencb.oskar.analysis.exceptions.ExecutionException;
+
+import java.nio.file.Path;
+
+public abstract class OskarExecutor {
+
+    protected ObjectMap params;
+    protected Path outDir;
+
+    protected OskarExecutor() {
+    }
+
+    protected OskarExecutor(ObjectMap params, Path outDir) {
+        setUp(params, outDir);
+    }
+
+    public final void setUp(ObjectMap executorParams, Path outDir) {
+        this.params = executorParams;
+        this.outDir = outDir;
+    }
+
+    /**
+     * Method to be implemented by subclasses with the actual execution.
+     * @throws ExecutionException on error
+     */
+    public abstract void exec() throws ExecutionException;
+
+    public final ObjectMap getParams() {
+        return params;
+    }
+
+    public final Path getOutDir() {
+        return outDir;
+    }
+}