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Merge pull request #2510 from opencb/TASK-6998-2.12.8 #1016

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Merge pull request #2510 from opencb/TASK-6998-2.12.8

Merge pull request #2510 from opencb/TASK-6998-2.12.8 #1016

Re-run triggered October 3, 2024 13:08
@pfuriopfurio
3c2269a
release-2.12.x
Status Failure
Total duration 2h 25m 34s
Artifacts 1

develop.yml

on: push
build  /  Build Java app
18m 29s
build / Build Java app
test  /  Execute Sonar Analysis
11m 4s
test / Execute Sonar Analysis
test  /  Execute JUnit and Jacoco tests
2h 6m
test / Execute JUnit and Jacoco tests
deploy-docker  /  Push Docker image
deploy-docker / Push Docker image
deploy-maven  /  Deploy to Maven and GitHub Packages
deploy-maven / Deploy to Maven and GitHub Packages
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Annotations

51 errors
ClinicalInterpretationAnalysisTest.: opencga-analysis/src/test/java/org/opencb/opencga/analysis/clinical/ClinicalInterpretationAnalysisTest.java#L80
Error computing pedigree graph for family family
ExomiserInterpretationAnalysisTest.: opencga-analysis/src/test/java/org/opencb/opencga/analysis/clinical/exomiser/ExomiserInterpretationAnalysisTest.java#L58
Error computing pedigree graph for family family
VariantCatalogQueryUtilsTest.: opencga-analysis/src/test/java/org/opencb/opencga/analysis/variant/manager/VariantCatalogQueryUtilsTest.java#L138
Error computing pedigree graph for family f1
ClinicalAnalysisManagerTest.deleteClinicalAnalysisWithEmptyInterpretations: opencga-catalog/src/test/java/org/opencb/opencga/catalog/managers/ClinicalAnalysisManagerTest.java#L2666
Error computing pedigree graph for family family
ClinicalAnalysisManagerTest.createClinicalAnalysisWithPanels: opencga-catalog/src/test/java/org/opencb/opencga/catalog/managers/ClinicalAnalysisManagerTest.java#L2864
Error computing pedigree graph for family family
ClinicalAnalysisManagerTest.searchClinicalAnalysisByProband: opencga-catalog/src/test/java/org/opencb/opencga/catalog/managers/ClinicalAnalysisManagerTest.java#L2598
Error computing pedigree graph for family family
ClinicalAnalysisManagerTest.updatePrimarySecondaryLockedInterpretationTest: opencga-catalog/src/test/java/org/opencb/opencga/catalog/managers/ClinicalAnalysisManagerTest.java#L2390
Error computing pedigree graph for family family
ClinicalAnalysisManagerTest.updateCustomConsentTest: opencga-catalog/src/test/java/org/opencb/opencga/catalog/managers/ClinicalAnalysisManagerTest.java#L1764
Error computing pedigree graph for family family
ClinicalAnalysisManagerTest.createAndTestStatusIdIsNotNull: opencga-catalog/src/test/java/org/opencb/opencga/catalog/managers/ClinicalAnalysisManagerTest.java#L230
Error computing pedigree graph for family family
ClinicalAnalysisManagerTest.updateInterpretationFindingsTest: opencga-catalog/src/test/java/org/opencb/opencga/catalog/managers/ClinicalAnalysisManagerTest.java#L1949
Error computing pedigree graph for family family
ClinicalAnalysisManagerTest.deleteLockedClinicalAnalysis: opencga-catalog/src/test/java/org/opencb/opencga/catalog/managers/ClinicalAnalysisManagerTest.java#L2761
Error computing pedigree graph for family family
ClinicalAnalysisManagerTest.searchInterpretationVersion: opencga-catalog/src/test/java/org/opencb/opencga/catalog/managers/ClinicalAnalysisManagerTest.java#L2067
Error computing pedigree graph for family family
ClinicalAnalysisManagerTest.createClinicalAnalysisTest: opencga-catalog/src/test/java/org/opencb/opencga/catalog/managers/ClinicalAnalysisManagerTest.java#L1580
Error computing pedigree graph for family family
ClinicalAnalysisManagerTest.assignPermissions: opencga-catalog/src/test/java/org/opencb/opencga/catalog/managers/ClinicalAnalysisManagerTest.java#L1489
Error computing pedigree graph for family family
ClinicalAnalysisManagerTest.updateCustomPriorityTest: opencga-catalog/src/test/java/org/opencb/opencga/catalog/managers/ClinicalAnalysisManagerTest.java#L1654
Error computing pedigree graph for family family
ClinicalAnalysisManagerTest.testSearchAnnotation: opencga-catalog/src/test/java/org/opencb/opencga/catalog/managers/ClinicalAnalysisManagerTest.java#L3937
Error computing pedigree graph for family family
ClinicalAnalysisManagerTest.updateClinicalAnalysisResponsible: opencga-catalog/src/test/java/org/opencb/opencga/catalog/managers/ClinicalAnalysisManagerTest.java#L381
Error computing pedigree graph for family family
ClinicalAnalysisManagerTest.updateClinicalAnalysisTest: opencga-catalog/src/test/java/org/opencb/opencga/catalog/managers/ClinicalAnalysisManagerTest.java#L1611
Error computing pedigree graph for family family
ClinicalAnalysisManagerTest.updateInterpretationTest: opencga-catalog/src/test/java/org/opencb/opencga/catalog/managers/ClinicalAnalysisManagerTest.java#L2202
Error computing pedigree graph for family family
ClinicalAnalysisManagerTest.sampleNotFoundInMember: opencga-catalog/src/test/java/org/opencb/opencga/catalog/managers/ClinicalAnalysisManagerTest.java#L3052
Error computing pedigree graph for family family
ClinicalAnalysisManagerTest.deleteClinicalAnalysisWithInterpretations: opencga-catalog/src/test/java/org/opencb/opencga/catalog/managers/ClinicalAnalysisManagerTest.java#L2701
Error computing pedigree graph for family family
ClinicalAnalysisManagerTest.searchByInternalAnnotationSetTest: opencga-catalog/src/test/java/org/opencb/opencga/catalog/managers/ClinicalAnalysisManagerTest.java#L3850
Error computing pedigree graph for family family
ClinicalAnalysisManagerTest.updateClinicalAnalystsTest: opencga-catalog/src/test/java/org/opencb/opencga/catalog/managers/ClinicalAnalysisManagerTest.java#L292
Error computing pedigree graph for family family
ClinicalAnalysisManagerTest.checkMoreThanOneSample: opencga-catalog/src/test/java/org/opencb/opencga/catalog/managers/ClinicalAnalysisManagerTest.java#L3082
Error computing pedigree graph for family family
ClinicalAnalysisManagerTest.searchByDisorderTest: opencga-catalog/src/test/java/org/opencb/opencga/catalog/managers/ClinicalAnalysisManagerTest.java#L2785
Error computing pedigree graph for family family
ClinicalAnalysisManagerTest.updateClinicalAnalysisReport: opencga-catalog/src/test/java/org/opencb/opencga/catalog/managers/ClinicalAnalysisManagerTest.java#L407
Error computing pedigree graph for family family
ClinicalAnalysisManagerTest.clearSecondaryInterpretation: opencga-catalog/src/test/java/org/opencb/opencga/catalog/managers/ClinicalAnalysisManagerTest.java#L1910
Error computing pedigree graph for family family
ClinicalAnalysisManagerTest.queryClinicalAnalysisByDate: opencga-catalog/src/test/java/org/opencb/opencga/catalog/managers/ClinicalAnalysisManagerTest.java#L715
Error computing pedigree graph for family family
ClinicalAnalysisManagerTest.deleteClinicalAnalysisTest: opencga-catalog/src/test/java/org/opencb/opencga/catalog/managers/ClinicalAnalysisManagerTest.java#L2649
Error computing pedigree graph for family family
ClinicalAnalysisManagerTest.updateClinicalAnalysisReportWithActions: opencga-catalog/src/test/java/org/opencb/opencga/catalog/managers/ClinicalAnalysisManagerTest.java#L482
Error computing pedigree graph for family family
ClinicalAnalysisManagerTest.updateCustomStatusTest: opencga-catalog/src/test/java/org/opencb/opencga/catalog/managers/ClinicalAnalysisManagerTest.java#L1632
Error computing pedigree graph for family family
ClinicalAnalysisManagerTest.createInterpretationWithPanels: opencga-catalog/src/test/java/org/opencb/opencga/catalog/managers/ClinicalAnalysisManagerTest.java#L2900
Error computing pedigree graph for family family
ClinicalAnalysisManagerTest.checkFamilyMembersOrder: opencga-catalog/src/test/java/org/opencb/opencga/catalog/managers/ClinicalAnalysisManagerTest.java#L2827
Error computing pedigree graph for family family
ClinicalAnalysisManagerTest.clearPrimaryInterpretation: opencga-catalog/src/test/java/org/opencb/opencga/catalog/managers/ClinicalAnalysisManagerTest.java#L1871
Error computing pedigree graph for family family
ClinicalAnalysisManagerTest.revertInterpretationVersion: opencga-catalog/src/test/java/org/opencb/opencga/catalog/managers/ClinicalAnalysisManagerTest.java#L2109
Error computing pedigree graph for family family
ClinicalAnalysisManagerTest.updateDisorder: opencga-catalog/src/test/java/org/opencb/opencga/catalog/managers/ClinicalAnalysisManagerTest.java#L2804
Error computing pedigree graph for family family
ClinicalAnalysisManagerTest.updateInterpretationCustomStatusTest: opencga-catalog/src/test/java/org/opencb/opencga/catalog/managers/ClinicalAnalysisManagerTest.java#L1801
Error computing pedigree graph for family family
ClinicalAnalysisManagerTest.updatePanelsInClinicalAnalysis: opencga-catalog/src/test/java/org/opencb/opencga/catalog/managers/ClinicalAnalysisManagerTest.java#L2919
Error computing pedigree graph for family family
ClinicalAnalysisManagerTest.createInterpretationTest: opencga-catalog/src/test/java/org/opencb/opencga/catalog/managers/ClinicalAnalysisManagerTest.java#L1819
Error computing pedigree graph for family family
ClinicalAnalysisManagerTest.updateClinicalAnalysisRequest: opencga-catalog/src/test/java/org/opencb/opencga/catalog/managers/ClinicalAnalysisManagerTest.java#L344
Error computing pedigree graph for family family
ClinicalAnalysisManagerTest.updateCustomFlagTest: opencga-catalog/src/test/java/org/opencb/opencga/catalog/managers/ClinicalAnalysisManagerTest.java#L1677
Error computing pedigree graph for family family
ClinicalAnalysisManagerTest.deleteInterpretationTest: opencga-catalog/src/test/java/org/opencb/opencga/catalog/managers/ClinicalAnalysisManagerTest.java#L2540
Error computing pedigree graph for family family
ClinicalAnalysisManagerTest.testQueriesInFamilyCase: opencga-catalog/src/test/java/org/opencb/opencga/catalog/managers/ClinicalAnalysisManagerTest.java#L2957
Error computing pedigree graph for family family
ClinicalAnalysisManagerTest.createMultipleCasesSameFamily: opencga-catalog/src/test/java/org/opencb/opencga/catalog/managers/ClinicalAnalysisManagerTest.java#L263
Error computing pedigree graph for family family
ClinicalAnalysisManagerTest.searchClinicalAnalysisByStatus: opencga-catalog/src/test/java/org/opencb/opencga/catalog/managers/ClinicalAnalysisManagerTest.java#L2611
Error computing pedigree graph for family family
ClinicalAnalysisManagerTest.createClinicalWithMissingSamplesInFamily: opencga-catalog/src/test/java/org/opencb/opencga/catalog/managers/ClinicalAnalysisManagerTest.java#L780
Error computing pedigree graph for family family
FamilyManagerTest.updateDeleteInUseInCATest: opencga-catalog/src/test/java/org/opencb/opencga/catalog/managers/FamilyManagerTest.java#L1415
Error computing pedigree graph for family family1
FamilyManagerTest.updateInUseInCATest: opencga-catalog/src/test/java/org/opencb/opencga/catalog/managers/FamilyManagerTest.java#L1374
Error computing pedigree graph for family family1
FamilyManagerTest.recalculateRoles: opencga-catalog/src/test/java/org/opencb/opencga/catalog/managers/FamilyManagerTest.java#L1241
Error computing pedigree graph for family Martinez-Martinez
FamilyManagerTest.createFamilyMissingMember: opencga-catalog/src/test/java/org/opencb/opencga/catalog/managers/FamilyManagerTest.java#L1088
Error computing pedigree graph for family Martinez-Martinez
test / Execute JUnit and Jacoco tests
There were 81 failed tests

Artifacts

Produced during runtime
Name Size
build-folder
761 MB