Prepared for version 0.4 release

Former-commit-id: 7ddb664

SConstruct

@@ -49,7 +49,7 @@ t = SConscript("test/SConscript", exports = ['env', 'debug', 'commons_path', 'bi
 # For the packaging manager: Don't forget to point the XXX_INCLUDE_PATH and XXX_LIBRARY_PATH 
 # variables to the application libraries folder!!
 tb = env.Package(NAME          = 'hpg-variant',
-                VERSION        = '0.3.1',
+                VERSION        = '0.4',
                 PACKAGEVERSION = 0,
                 PACKAGETYPE    = 'src_targz',
                 source         = env.FindSourceFiles() + env.FindHeaderFiles(progs) + 

deb/SConscript

@@ -4,7 +4,7 @@ Import('env') # exported by parent SConstruct
 
 # Here's the core info for the DEBIAN/control file of the package
 DEBNAME = "hpg-variant"
-DEBVERSION = "0.3.1"
+DEBVERSION = "0.4"
 DEBMAINT = "Cristina Yenyxe Gonzalez Garcia <[email protected]>"
 DEBARCH = "amd64"
 DEBDEPENDS = "libc6, libconfig8, libcurl4-openssl-dev, libgsl0ldbl, libxml2, zlib1g"

rpm/SConscript

@@ -3,14 +3,14 @@ import hashlib, os, shutil, sys
 Import('env') # exported by parent SConstruct
 
 RPMNAME = "hpg-variant"
-RPMVERSION = "0.3"
+RPMVERSION = "0.4"
 RPMARCH = "x86_64"
 RPMBUILDREQUIRES = "gcc glibc-devel scons libconfig-devel libcurl-devel gsl-devel libxml2-devel zlib-devel".split(" ")
 RPMREQUIRES = "libconfig libcurl gsl libxml2 zlib".split(" ") # what are we dependent on?
 RPMSUMMARY = "HPG Variant summary"
 RPMDESC = "HPG Variant retrieves the effect of genome mutations and allows to conduct analysis"
 RPMSECTION = "Application/Engineering"
-RPMSOURCE = "hpg-variant-0.3.tar.gz"
+RPMSOURCE = "hpg-variant-0.4.tar.gz"
 RPMURL = "http://bioinfo.cipf.es"
 
 RPMBUILDIR = 'rpmbuild'

rpm/hpg-variant.spec

@@ -1,5 +1,5 @@
 %define name hpg-variant
-%define version 0.3.1
+%define version 0.4
 Name:           %{name}
 Version:        %{version}
 Release:        1%{?dist}
@@ -55,4 +55,8 @@ cp bin/vcf-info-fields.conf %{buildroot}%{_sysconfdir}/%{name}/
 
 
 %changelog
-
+* Mon Mar 04 2013 Cristina Yenyxe Gonzalez <[email protected]> - 0.4
+- Filter output uses default names, 'your_vcf_file.vcf.filtered' and
+  'your_vcf_file.vcf.rejected', 'out' argument reserved for tool output
+- Merge tool notifies when a sample appears more than once
+- GWAS tools notify when a sample appears more than once