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lib: fix sonnar issues, #TASK-5407, #TASK-5387 #531

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lib: fix sonnar issues, #TASK-5407, #TASK-5387

lib: fix sonnar issues, #TASK-5407, #TASK-5387 #531

GitHub Actions / Surefire tests report failed Oct 1, 2024 in 0s

186 tests run, 104 skipped, 11 failed.

Annotations

Check failure on line 58 in cellbase-lib/src/test/java/org/opencb/cellbase/lib/impl/core/MongoDBAdaptorFactoryTest.java

See this annotation in the file changed.

@github-actions github-actions / Surefire tests report

MongoDBAdaptorFactoryTest.testGetDatabaseName 

expected: <true> but was: <false>
Raw output 
org.opentest4j.AssertionFailedError: expected: <true> but was: <false>
	at org.opencb.cellbase.lib.impl.core.MongoDBAdaptorFactoryTest.testGetDatabaseName(MongoDBAdaptorFactoryTest.java:58)

Check failure on line 2069 in cellbase-lib/src/test/java/org/opencb/cellbase/lib/impl/core/VariantAnnotationCalculatorTest.java

See this annotation in the file changed.

@github-actions github-actions / Surefire tests report

VariantAnnotationCalculatorTest.testLicensedDataHgmdCosmicApiKeyAnnotation 

org.opentest4j.AssertionFailedError: 
	at org.opencb.cellbase.lib.impl.core.VariantAnnotationCalculatorTest.testLicensedDataHgmdCosmicApiKeyAnnotation(VariantAnnotationCalculatorTest.java:2069)
Raw output 
org.opentest4j.AssertionFailedError: 
	at org.opencb.cellbase.lib.impl.core.VariantAnnotationCalculatorTest.testLicensedDataHgmdCosmicApiKeyAnnotation(VariantAnnotationCalculatorTest.java:2069)

Check failure on line 2096 in cellbase-lib/src/test/java/org/opencb/cellbase/lib/impl/core/VariantAnnotationCalculatorTest.java

See this annotation in the file changed.

@github-actions github-actions / Surefire tests report

VariantAnnotationCalculatorTest.testLicensedDataHgmdSpliceAiApiKeyAnnotation 

org.opentest4j.AssertionFailedError: 
	at org.opencb.cellbase.lib.impl.core.VariantAnnotationCalculatorTest.testLicensedDataHgmdSpliceAiApiKeyAnnotation(VariantAnnotationCalculatorTest.java:2096)
Raw output 
org.opentest4j.AssertionFailedError: 
	at org.opencb.cellbase.lib.impl.core.VariantAnnotationCalculatorTest.testLicensedDataHgmdSpliceAiApiKeyAnnotation(VariantAnnotationCalculatorTest.java:2096)

Check failure on line 2123 in cellbase-lib/src/test/java/org/opencb/cellbase/lib/impl/core/VariantAnnotationCalculatorTest.java

See this annotation in the file changed.

@github-actions github-actions / Surefire tests report

VariantAnnotationCalculatorTest.testLicensedDataCosmicSpliceApiKeyAnnotation 

org.opentest4j.AssertionFailedError: 
	at org.opencb.cellbase.lib.impl.core.VariantAnnotationCalculatorTest.testLicensedDataCosmicSpliceApiKeyAnnotation(VariantAnnotationCalculatorTest.java:2123)
Raw output 
org.opentest4j.AssertionFailedError: 
	at org.opencb.cellbase.lib.impl.core.VariantAnnotationCalculatorTest.testLicensedDataCosmicSpliceApiKeyAnnotation(VariantAnnotationCalculatorTest.java:2123)

Check failure on line 2042 in cellbase-lib/src/test/java/org/opencb/cellbase/lib/impl/core/VariantAnnotationCalculatorTest.java

See this annotation in the file changed.

@github-actions github-actions / Surefire tests report

VariantAnnotationCalculatorTest.testLicensedDataSpliceApiKeyAnnotation 

org.opentest4j.AssertionFailedError: 
	at org.opencb.cellbase.lib.impl.core.VariantAnnotationCalculatorTest.testLicensedDataSpliceApiKeyAnnotation(VariantAnnotationCalculatorTest.java:2042)
Raw output 
org.opentest4j.AssertionFailedError: 
	at org.opencb.cellbase.lib.impl.core.VariantAnnotationCalculatorTest.testLicensedDataSpliceApiKeyAnnotation(VariantAnnotationCalculatorTest.java:2042)

Check failure on line 1078 in cellbase-lib/src/test/java/org/opencb/cellbase/lib/impl/core/VariantAnnotationCalculatorTest.java

See this annotation in the file changed.

@github-actions github-actions / Surefire tests report

VariantAnnotationCalculatorTest.testLicensedClinicalHGMDandCOSMICAnnotation 

java.lang.NullPointerException
	at org.opencb.cellbase.lib.impl.core.VariantAnnotationCalculatorTest.testLicensedClinicalHGMDandCOSMICAnnotation(VariantAnnotationCalculatorTest.java:1078)
Raw output 
java.lang.NullPointerException
	at org.opencb.cellbase.lib.impl.core.VariantAnnotationCalculatorTest.testLicensedClinicalHGMDandCOSMICAnnotation(VariantAnnotationCalculatorTest.java:1078)

Check failure on line 1099 in cellbase-lib/src/test/java/org/opencb/cellbase/lib/impl/core/VariantAnnotationCalculatorTest.java

See this annotation in the file changed.

@github-actions github-actions / Surefire tests report

VariantAnnotationCalculatorTest.testNoLicensedClinicalAnnotation 

java.lang.NullPointerException
	at org.opencb.cellbase.lib.impl.core.VariantAnnotationCalculatorTest.testNoLicensedClinicalAnnotation(VariantAnnotationCalculatorTest.java:1099)
Raw output 
java.lang.NullPointerException
	at org.opencb.cellbase.lib.impl.core.VariantAnnotationCalculatorTest.testNoLicensedClinicalAnnotation(VariantAnnotationCalculatorTest.java:1099)

Check failure on line 1058 in cellbase-lib/src/test/java/org/opencb/cellbase/lib/impl/core/VariantAnnotationCalculatorTest.java

See this annotation in the file changed.

@github-actions github-actions / Surefire tests report

VariantAnnotationCalculatorTest.testLicensedClinicalHGMDAnnotation 

java.lang.NullPointerException
	at org.opencb.cellbase.lib.impl.core.VariantAnnotationCalculatorTest.testLicensedClinicalHGMDAnnotation(VariantAnnotationCalculatorTest.java:1058)
Raw output 
java.lang.NullPointerException
	at org.opencb.cellbase.lib.impl.core.VariantAnnotationCalculatorTest.testLicensedClinicalHGMDAnnotation(VariantAnnotationCalculatorTest.java:1058)

Check failure on line 2015 in cellbase-lib/src/test/java/org/opencb/cellbase/lib/impl/core/VariantAnnotationCalculatorTest.java

See this annotation in the file changed.

@github-actions github-actions / Surefire tests report

VariantAnnotationCalculatorTest.testLicensedDataCosmicApiKeyAnnotation 

org.opentest4j.AssertionFailedError: 
	at org.opencb.cellbase.lib.impl.core.VariantAnnotationCalculatorTest.testLicensedDataCosmicApiKeyAnnotation(VariantAnnotationCalculatorTest.java:2015)
Raw output 
org.opentest4j.AssertionFailedError: 
	at org.opencb.cellbase.lib.impl.core.VariantAnnotationCalculatorTest.testLicensedDataCosmicApiKeyAnnotation(VariantAnnotationCalculatorTest.java:2015)

Check failure on line 1961 in cellbase-lib/src/test/java/org/opencb/cellbase/lib/impl/core/VariantAnnotationCalculatorTest.java

See this annotation in the file changed.

@github-actions github-actions / Surefire tests report

VariantAnnotationCalculatorTest.testLicensedDataUnisersalApiKeyAnnotation 

org.opentest4j.AssertionFailedError: 
	at org.opencb.cellbase.lib.impl.core.VariantAnnotationCalculatorTest.testLicensedDataUnisersalApiKeyAnnotation(VariantAnnotationCalculatorTest.java:1961)
Raw output 
org.opentest4j.AssertionFailedError: 
	at org.opencb.cellbase.lib.impl.core.VariantAnnotationCalculatorTest.testLicensedDataUnisersalApiKeyAnnotation(VariantAnnotationCalculatorTest.java:1961)

Check failure on line 1988 in cellbase-lib/src/test/java/org/opencb/cellbase/lib/impl/core/VariantAnnotationCalculatorTest.java

See this annotation in the file changed.

@github-actions github-actions / Surefire tests report

VariantAnnotationCalculatorTest.testLicensedDataHgmdApiKeyAnnotation 

org.opentest4j.AssertionFailedError: 
	at org.opencb.cellbase.lib.impl.core.VariantAnnotationCalculatorTest.testLicensedDataHgmdApiKeyAnnotation(VariantAnnotationCalculatorTest.java:1988)
Raw output 
org.opentest4j.AssertionFailedError: 
	at org.opencb.cellbase.lib.impl.core.VariantAnnotationCalculatorTest.testLicensedDataHgmdApiKeyAnnotation(VariantAnnotationCalculatorTest.java:1988)
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