TASK-5318 - Implement custom annotator to allow clients private files #695
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On branch TASK-5318 Changes to be committed: modified: cellbase-core/src/main/java/org/opencb/cellbase/core/exception/CellBaseException.java
…TASK-6427, #TASK-5318 On branch TASK-5318 Changes to be committed: modified: cellbase-lib/src/main/java/org/opencb/cellbase/lib/builders/clinical/variant/CosmicIndexer.java new file: cellbase-lib/src/main/java/org/opencb/cellbase/lib/builders/clinical/variant/CosmicIndexerCallback.java
…data, #TASK-6427, #TASK-5318 On branch TASK-5318 Changes to be committed: modified: cellbase-lib/src/main/java/org/opencb/cellbase/lib/builders/clinical/variant/ClinVarIndexer.java modified: cellbase-lib/src/main/java/org/opencb/cellbase/lib/builders/clinical/variant/ClinicalIndexer.java modified: cellbase-lib/src/main/java/org/opencb/cellbase/lib/builders/clinical/variant/ClinicalVariantBuilder.java modified: cellbase-lib/src/main/java/org/opencb/cellbase/lib/builders/clinical/variant/IARCTP53Indexer.java
…ASK-5318 On branch TASK-5318 Changes to be committed: modified: cellbase-lib/src/main/java/org/opencb/cellbase/lib/builders/clinical/variant/ClinicalIndexer.java
jtarraga
changed the title
j-coll
changed the title
j-coll
previously approved these changes
Aug 9, 2024
j-coll
approved these changes
Sep 26, 2024
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Implement custom annotator to allow clients private files, e.g., COSMIC annotation; so the COSMIC parser is moved to the package biodata-formats