lib: add MongoDB indexes for PGS collections, #TASK-5410, #TASK-5387

opencb · Jan 3, 2024 · c6c628b · c6c628b
1 parent b0aeca4
commit c6c628b
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Showing 2 changed files with 13 additions and 4 deletions.
diff --git a/cellbase-lib/src/main/resources/mongodb-indexes.json b/cellbase-lib/src/main/resources/mongodb-indexes.json
@@ -146,7 +146,9 @@
 {"collection": "pharmacogenomics", "fields": {"variants.confidence": 1}, "options": {"background": true}}
 {"collection": "pharmacogenomics", "fields": {"variants.evidences.pubmed": 1}, "options": {"background": true}}
 
-{"collection": "common_polygenic_score", "fields": {"id": 1}, "options": {"background": true}}
-{"collection": "variant_polygenic_score", "fields": {"_chunkIds": 1}, "options": {"background": true}}
-{"collection": "variant_polygenic_score", "fields": {"chromosome": 1, "position": 1}, "options": {"background": true}}
-{"collection": "variant_polygenic_score", "fields": {"polygenicScores.id": 1}, "options": {"background": true}}
+{"collection": "common_polygenic_scores", "fields": {"id": 1}, "options": {"background": true}}
+{"collection": "common_polygenic_scores", "fields": {"name": 1}, "options": {"background": true}}
+{"collection": "common_polygenic_scores", "fields": {"source": 1}, "options": {"background": true}}
+{"collection": "variant_polygenic_scores", "fields": {"_chunkIds": 1}, "options": {"background": true}}
+{"collection": "variant_polygenic_scores", "fields": {"chromosome": 1, "position": 1}, "options": {"background": true}}
+{"collection": "variant_polygenic_scores", "fields": {"polygenicScores.id": 1}, "options": {"background": true}}
diff --git a/cellbase-lib/src/test/resources/index/mongodb-indexes.json b/cellbase-lib/src/test/resources/index/mongodb-indexes.json
@@ -127,3 +127,10 @@
 
 {"collection": "splice_score", "fields": {"_chunkIds": 1}, "options": {"background": true}}
 {"collection": "splice_score", "fields": {"chromosome": 1, "position": 1}, "options": {"background": true}}
+
+{"collection": "common_polygenic_scores", "fields": {"id": 1}, "options": {"background": true}}
+{"collection": "common_polygenic_scores", "fields": {"name": 1}, "options": {"background": true}}
+{"collection": "common_polygenic_scores", "fields": {"source": 1}, "options": {"background": true}}
+{"collection": "variant_polygenic_scores", "fields": {"_chunkIds": 1}, "options": {"background": true}}
+{"collection": "variant_polygenic_scores", "fields": {"chromosome": 1, "position": 1}, "options": {"background": true}}
+{"collection": "variant_polygenic_scores", "fields": {"polygenicScores.id": 1}, "options": {"background": true}}