Merge branch 'release-6.1.x'

opencb · May 21, 2024 · 8b1829b · 8b1829b
2 parents 2de3679 + b4c171c
commit 8b1829b
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Showing 7 changed files with 62 additions and 8 deletions.
diff --git a/.github/workflows/manual-test.yml b/.github/workflows/manual-test.yml
@@ -0,0 +1,54 @@
+name: Manual Junit test the project
+
+on:
+  workflow_dispatch:
+    inputs:
+      branch:
+        description: 'Opencga branch to run the tests'
+        default: 'develop'
+        required: true
+      fail-never:
+        type: boolean
+        description: 'The process executes all tests even if some fail.'
+        default: false
+        required: false
+
+jobs:
+  test:
+    name: JUnit Test
+    runs-on: ubuntu-22.04
+    steps:
+      - uses: actions/checkout@v3
+        with:
+          ref: ${{ github.event.inputs.branch }}
+          fetch-depth: '0'
+      - name: Set up JDK 11
+        uses: actions/setup-java@v3
+        with:
+          distribution: 'temurin'
+          java-version: '11'
+          cache: 'maven'
+      - name: K8s Tunnel MongoDB
+        run: |
+          wget https://dl.k8s.io/release/v1.28.2/bin/linux/amd64/kubectl
+          chmod +x ./kubectl
+          echo "${{ secrets.AZURE_KUBE_CONFIG }}" > admin.conf 
+          ./kubectl -n cellbase-db port-forward services/cellbase-rs0-svc 27017:27017 --kubeconfig ./admin.conf &
+      - name: Install dependencies branches
+        run: |
+          if [ -f "./.github/workflows/scripts/get_same_branch.sh" ]; then
+            chmod +x ./.github/workflows/scripts/get_same_branch.sh
+            ./.github/workflows/scripts/get_same_branch.sh ${{ github.ref_name }}
+          else
+             echo "./.github/workflows/scripts/get_same_branch.sh does not exist."
+          fi
+      - name: Test and Analyze
+        env:
+          GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }} # Needed to get PR information, if any
+          SONAR_TOKEN: ${{ secrets.SONAR_TOKEN }}
+        run: |
+          FAIL_NEVER=""
+          if [ "${{ github.event.inputs.fail-never }}" == "true" ]; then
+            FAIL_NEVER="--fail-never"
+          fi
+          mvn install surefire-report:report ${FAIL_NEVER} -Dcheckstyle.skip
diff --git a/cellbase-app/pom.xml b/cellbase-app/pom.xml
@@ -6,7 +6,7 @@
     <parent>
         <groupId>org.opencb.cellbase</groupId>
         <artifactId>cellbase</artifactId>
-        <version>6.0.0</version>
+        <version>6.1.0</version>
         <relativePath>../pom.xml</relativePath>
     </parent>
 

diff --git a/cellbase-client/pom.xml b/cellbase-client/pom.xml
@@ -6,7 +6,7 @@
     <parent>
         <groupId>org.opencb.cellbase</groupId>
         <artifactId>cellbase</artifactId>
-        <version>6.0.0</version>
+        <version>6.1.0</version>
         <relativePath>../pom.xml</relativePath>
     </parent>
 

diff --git a/cellbase-core/pom.xml b/cellbase-core/pom.xml
@@ -6,7 +6,7 @@
     <parent>
         <groupId>org.opencb.cellbase</groupId>
         <artifactId>cellbase</artifactId>
-        <version>6.0.0</version>
+        <version>6.1.0</version>
         <relativePath>../pom.xml</relativePath>
     </parent>
 

diff --git a/cellbase-lib/pom.xml b/cellbase-lib/pom.xml
@@ -6,7 +6,7 @@
     <parent>
         <groupId>org.opencb.cellbase</groupId>
         <artifactId>cellbase</artifactId>
-        <version>6.0.0</version>
+        <version>6.1.0</version>
         <relativePath>../pom.xml</relativePath>
     </parent>
 

diff --git a/cellbase-server/pom.xml b/cellbase-server/pom.xml
@@ -6,7 +6,7 @@
     <parent>
         <groupId>org.opencb.cellbase</groupId>
         <artifactId>cellbase</artifactId>
-        <version>6.0.0</version>
+        <version>6.1.0</version>
         <relativePath>../pom.xml</relativePath>
     </parent>
 

diff --git a/pom.xml b/pom.xml
@@ -6,7 +6,7 @@
 
     <groupId>org.opencb.cellbase</groupId>
     <artifactId>cellbase</artifactId>
-    <version>6.0.0</version>
+    <version>6.1.0</version>
     <packaging>pom</packaging>
 
     <name>CellBase project</name>
@@ -23,8 +23,8 @@
 
     <properties>
         <pycellbase.version>${project.version}</pycellbase.version>
-        <java-common-libs.version>5.0.0</java-common-libs.version>
-        <biodata.version>3.0.0</biodata.version>
+        <java-common-libs.version>5.1.0</java-common-libs.version>
+        <biodata.version>3.1.0</biodata.version>
         <bionetdb.version>0.1.0</bionetdb.version>
         <jackson.version>2.11.4</jackson.version>
         <jackson-asl.version>1.9.13</jackson-asl.version>