lib: fix command line to execute Perl script, #TASK-5575, #TASK-5564

opencb · Jul 24, 2024 · 8030b02 · 8030b02
1 parent 642935a
commit 8030b02
Showing 1 changed file with 0 additions and 1 deletion.
diff --git a/cellbase-lib/src/main/java/org/opencb/cellbase/lib/download/GeneDownloadManager.java b/cellbase-lib/src/main/java/org/opencb/cellbase/lib/download/GeneDownloadManager.java
@@ -191,7 +191,6 @@ public void downloadEnsemblCanonical(Path geneDownloadPath) throws IOException,
             // Params
             String params = "/opt/cellbase/scripts/ensembl-scripts/" + ensemblCanonicalScript
                     + " --species \"" + speciesConfiguration.getId() + "\""
-                    + " --assembly \"" + assemblyConfiguration.getName() + "\""
                     + " --outdir \"" + outputBinding.getValue() + "\"";
 
             // Execute perl script in docker