lib: fix gene downloader for RefSeq files, #TASK-5575, #TASK-5564

opencb · Jul 29, 2024 · 7f77dec · 7f77dec
1 parent 039aa81
commit 7f77dec
Showing 1 changed file with 1 addition and 1 deletion.
diff --git a/cellbase-lib/src/main/java/org/opencb/cellbase/lib/download/GeneDownloadManager.java b/cellbase-lib/src/main/java/org/opencb/cellbase/lib/download/GeneDownloadManager.java
@@ -152,7 +152,7 @@ private List<DownloadFile> downloadRefSeq(Path refSeqDownloadPath) throws IOExce
         if (SpeciesUtils.hasData(configuration, speciesConfiguration.getScientificName(), GENE_DATA)) {
             // GTF, DNA, RNA, Protein
             String prefixId = getConfigurationFileIdPrefix(speciesConfiguration.getScientificName());
-            if (configuration.getDownload().getGenomicSuperDups().getFiles().containsKey(prefixId + REFSEQ_GENOMIC_GTF_FILE_ID)
+            if (configuration.getDownload().getRefSeq().getFiles().containsKey(prefixId + REFSEQ_GENOMIC_GTF_FILE_ID)
                     && !isAlreadyDownloaded(refSeqDownloadPath.resolve(getDataVersionFilename(REFSEQ_DATA)), getDataName(REFSEQ_DATA))) {
                 logger.info(CATEGORY_DOWNLOADING_LOG_MESSAGE, getDataName(REFSEQ_DATA), getDataCategory(REFSEQ_DATA));