pom: Some security version updates #TASK-4437

opencb · Dec 11, 2023 · 15b3d59 · 15b3d59
1 parent fc08de6
commit 15b3d59
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Showing 3 changed files with 13 additions and 12 deletions.
diff --git a/cellbase-lib/pom.xml b/cellbase-lib/pom.xml
@@ -137,10 +137,10 @@
             <groupId>com.github.samtools</groupId>
             <artifactId>htsjdk</artifactId>
         </dependency>
-        <dependency>
+<!--        <dependency>
             <groupId>org.codehaus.jackson</groupId>
             <artifactId>jackson-mapper-asl</artifactId>
-        </dependency>
+        </dependency>-->
         <dependency>
             <groupId>io.jsonwebtoken</groupId>
             <artifactId>jjwt-api</artifactId>

diff --git a/cellbase-lib/src/main/java/org/opencb/cellbase/lib/impl/core/MetaMongoDBAdaptor.java b/cellbase-lib/src/main/java/org/opencb/cellbase/lib/impl/core/MetaMongoDBAdaptor.java
@@ -16,17 +16,17 @@
 
 package org.opencb.cellbase.lib.impl.core;
 
+import com.fasterxml.jackson.databind.ObjectMapper;
 import com.mongodb.client.model.Filters;
 import com.mongodb.client.model.Updates;
 import org.bson.BsonDocument;
 import org.bson.Document;
 import org.bson.conversions.Bson;
-import org.codehaus.jackson.map.ObjectMapper;
+import org.opencb.cellbase.core.api.key.ApiKeyStats;
 import org.opencb.cellbase.core.api.query.AbstractQuery;
 import org.opencb.cellbase.core.api.query.ProjectionQueryOptions;
 import org.opencb.cellbase.core.exception.CellBaseException;
 import org.opencb.cellbase.core.result.CellBaseDataResult;
-import org.opencb.cellbase.core.api.key.ApiKeyStats;
 import org.opencb.cellbase.lib.iterator.CellBaseIterator;
 import org.opencb.commons.datastore.core.FacetField;
 import org.opencb.commons.datastore.core.QueryOptions;

diff --git a/pom.xml b/pom.xml
@@ -26,15 +26,17 @@
         <java-common-libs.version>4.13.0-SNAPSHOT</java-common-libs.version>
         <biodata.version>2.13.0-SNAPSHOT</biodata.version>
         <bionetdb.version>0.1.0</bionetdb.version>
-        <jackson.version>2.11.4</jackson.version>
-        <jackson-asl.version>1.9.13</jackson-asl.version>
+        <jetty.version>9.4.51.v20230217</jetty.version>
+
+        <jackson.version>2.14.3</jackson.version>
+        <commons-lang3.version>3.14.0</commons-lang3.version>
+        <slf4j.version>1.7.36</slf4j.version>
+
         <jersey.version>2.30.1</jersey.version>
-        <slf4j.version>1.7.32</slf4j.version>
         <log4j.version>2.17.2</log4j.version>
         <junit.platform.version>1.5.2</junit.platform.version>
         <junit.jupiter.version>5.5.2</junit.jupiter.version>
         <jacoco.version>0.8.8</jacoco.version>
-        <jetty.version>9.4.17.v20190418</jetty.version>
         <jjwt.version>0.11.5</jjwt.version>
         <swagger-annotations.version>1.6.5</swagger-annotations.version>
         <javax.servlet-api.version>3.1.0</javax.servlet-api.version>
@@ -46,11 +48,10 @@
         <guava.version>19.0</guava.version>
         <avro.version>1.9.1</avro.version>
         <hamcrest.version>1.3</hamcrest.version>
-        <htsjdk.version>2.23.0</htsjdk.version>
+        <htsjdk.version>3.0.5</htsjdk.version>
         <grpc.version>1.48.0</grpc.version>
         <commons-lang.version>2.4</commons-lang.version>
         <commons-io.version>2.4</commons-io.version>
-        <commons-lang3.version>3.12.0</commons-lang3.version>
         <jakarta.ws.rs-api.version>2.1.6</jakarta.ws.rs-api.version>
         <commons-collections4.version>4.4</commons-collections4.version>
         <jcommander.version>1.69</jcommander.version>
@@ -412,11 +413,11 @@
                 <artifactId>swagger-annotations</artifactId>
                 <version>${swagger-annotations.version}</version>
             </dependency>
-            <dependency>
+<!--            <dependency>
                 <groupId>org.codehaus.jackson</groupId>
                 <artifactId>jackson-mapper-asl</artifactId>
                 <version>${jackson-asl.version}</version>
-            </dependency>
+            </dependency>-->
             <dependency>
                 <groupId>io.jsonwebtoken</groupId>
                 <artifactId>jjwt-jackson</artifactId>