Merge pull request #271 from dominikl/ubuntu2204

Ubuntu2204

.github/workflows/main.yml

@@ -12,11 +12,11 @@ jobs:
     runs-on: ubuntu-latest
     strategy:
       matrix:
-        os: [centos7, debian10, ubuntu1804, ubuntu2004]
-        pg: [pg11, pg12, pg13, pg14]
+        os: [debian10, ubuntu1804, ubuntu2004, ubuntu2204]
+        pg: [pg13, pg14]
         exclude:
-          - os: ubuntu2004
-            pg: pg11
+          - os: ubuntu2204
+            pg: pg13
     steps:
       - name: Checkout
         uses: actions/checkout@v1

linux/autogenerate.sh

@@ -14,7 +14,7 @@ echo "${l}"
 
 #generate the walkthrough for all supported os
 function generate_all() {
-	values=(centos7 debian10 ubuntu1804 ubuntu2004)
+	values=(centos7 debian10 ubuntu1804 ubuntu2004 ubuntu2204)
 	for os in "${values[@]}"; do
   		echo "${os}"
   		 generate ${os}

linux/install_ubuntu2204.sh

@@ -0,0 +1,52 @@
+#!/bin/bash
+
+set -e -u -x
+
+OMEROVER=${OMEROVER:-latest}
+PGVER=${PGVER:-pg14}
+ICEVER=${ICEVER:-ice36}
+
+. settings.env
+
+bash -eux step01_ubuntu_init.sh
+
+# disable daemon restart pop-up:
+# see https://stackoverflow.com/questions/73397110/how-to-stop-ubuntu-pop-up-daemons-using-outdated-libraries-when-using-apt-to-i
+if [ ! -f /.dockerenv ]; then
+   echo "\$nrconf{restart} = 'a';" >> /etc/needrestart/needrestart.conf
+fi
+
+# install java
+bash -eux step01_ubuntu1804_java_deps.sh
+
+bash -eux step01_ubuntu1804_deps.sh
+
+# install ice
+bash -eux step01_ubuntu2204_ice_deps.sh
+
+cat omero-ice36.env >> /etc/profile
+
+# install Postgres
+bash -eux step01_ubuntu2204_pg_deps.sh
+
+bash -eux step02_all_setup.sh
+
+bash -eux step03_all_postgres.sh
+
+cp settings.env step04_all_omero.sh setup_omero_db.sh ~omero-server
+
+bash -eux step01_ubuntu2204_ice_venv.sh
+bash -eux step04_all_omero_install.sh
+
+su - omero-server -c "OMEROVER=$OMEROVER ICEVER=$ICEVER bash -eux step04_all_omero.sh"
+su - omero-server -c "bash setup_omero_db.sh"
+
+
+#If you don't want to use the init.d scripts you can start OMERO manually:
+#su - omero-server -c ". /home/omero-server/settings.env omero admin start"
+
+bash -eux step06_ubuntu_daemon.sh
+
+bash -eux step07_all_perms.sh
+
+#service omero start

linux/step01_ubuntu2204_ice_deps.sh

@@ -0,0 +1,27 @@
+#!/bin/bash
+
+ICEVER=${ICEVER:-ice36}
+
+echo $ICEVER
+# Ice installation
+if [ "$ICEVER" = "ice36" ]; then
+    #start-recommended
+    apt-get update && \
+    apt-get install -y -q \
+        db5.3-util \
+        bzip2 \
+        libdb++ \
+        libexpat1 \
+        libmcpp0 \
+        openssl \
+        mcpp \
+        zlib1g
+
+    cd /tmp
+    wget -q https://github.com/glencoesoftware/zeroc-ice-ubuntu2204-x86_64/releases/download/20221004/Ice-3.6.5-ubuntu2204-x86_64.tar.gz
+    tar xf Ice-3.6.5-ubuntu2204-x86_64.tar.gz
+    mv Ice-3.6.5 /opt/ice-3.6.5
+    echo /opt/ice-3.6.5/lib64 > /etc/ld.so.conf.d/ice-x86_64.conf
+    ldconfig
+    #end-recommended
+fi

linux/step01_ubuntu2204_ice_venv.sh

@@ -0,0 +1,18 @@
+#!/bin/bash
+
+set -e -u -x
+
+VENV_SERVER=${VENV_SERVER:-/opt/omero/server/venv3}
+#start-ice-py
+# Create a virtual env
+python3 -mvenv $VENV_SERVER
+
+# Upgrade pip
+$VENV_SERVER/bin/pip install --upgrade pip
+
+# Install the Ice Python binding
+$VENV_SERVER/bin/pip install https://github.com/glencoesoftware/zeroc-ice-py-ubuntu2204-x86_64/releases/download/20221004/zeroc_ice-3.6.5-cp310-cp310-linux_x86_64.whl
+
+# Install server dependencies
+$VENV_SERVER/bin/pip install omero-server
+#end-ice-py

linux/step01_ubuntu2204_pg_deps.sh

@@ -0,0 +1,7 @@
+#!/bin/bash
+
+#start-recommended
+apt-get update
+apt-get -y install postgresql
+service postgresql start
+#end-recommended

linux/test/ubuntu2204/Dockerfile

@@ -0,0 +1,28 @@
+# Dockerfile for testing the OMERO Linux installation instructions
+# Not intended for production use
+FROM ubuntu:22.04
+MAINTAINER [email protected]
+
+ARG OMEROVER=latest
+ARG JAVAVER=openjdk11
+ARG ICEVER=ice36
+ARG PGVER=pg14
+
+RUN touch /.dockerenv
+
+ENV TZ=Europe/London
+RUN ln -snf /usr/share/zoneinfo/$TZ /etc/localtime && echo $TZ > /etc/timezone
+
+RUN echo 'APT::Install-Recommends 0;' > /etc/apt/apt.conf.d/01norecommends \
+ && echo 'APT::Install-Suggests 0;' >> /etc/apt/apt.conf.d/01norecommends
+
+ADD omero-install-test.zip /
+RUN apt-get update && apt-get -y install unzip && unzip omero-install-test.zip
+
+RUN cd omero-install-test && \
+    bash install_ubuntu2204.sh && \
+    bash docker_shutdown_ubuntu.sh
+ADD run.sh /home/omero-server/run.sh
+
+EXPOSE 80 4063 4064
+CMD ["/bin/bash", "-e", "/home/omero-server/run.sh"]

linux/test/ubuntu2204/run.sh

@@ -0,0 +1,12 @@
+#!/bin/bash
+
+service postgresql start
+
+#service crond start # Doesn't work in Docker
+cron
+service omero-server start
+if [ -t 1 ] ; then
+    exec bash
+else
+    exec tail -F /opt/omero/server/OMERO.server/var/log/*
+fi