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Update index.md #225

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Update index.md
bugraoezdemir Jan 24, 2024
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bugraoezdemir Jan 24, 2024
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2 changes: 1 addition & 1 deletion about/index.md
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Expand Up @@ -58,7 +58,7 @@ for working with NGFF data.
The following pages are intended to provide an overview of the available resources in the NGFF space:

* [Data Resources](../data/index.md): List of data repositories where OME-Zarr data can be found.
* [Tools](../tools/index.rst): GUIs and libraries that can be used for accessing OME-Zarr formatted data.
* [Tools](../tools/index.md): GUIs and libraries that can be used for accessing OME-Zarr formatted data.
* [Publications](../publications/index.md): List of publications referencing OME-NGFF or publishing
datasets in OME-Zarr.

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6 changes: 6 additions & 0 deletions tools/index.md
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Expand Up @@ -79,6 +79,12 @@ A GUI application for conversion of bioimage formats into OME-NGFF (Next-Generat
A tool for converting multi-terabyte stacks of images into a multiscale OME-NGFF Zarr.


### BatchConvert
<https://github.com/Euro-BioImaging/BatchConvert>

A Nextflow based command-line tool that wraps bioformats2raw for parallelised conversion of image data collections to OME-Zarr.


## Libraries for reading/writing OME-Zarr files

Various libraries for reading/writing OME-Zarr files in Python were evaluated as part of the BioVisionCenter "Next generation bioimage analysis workflows hackathon" 2023 in Zurich, Switzerland: https://github.com/jwindhager/ome-ngff-readers-writers/.
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