mamba-test #327
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| # This workflow will install Python dependencies using Mamba, | |
| # run tests and lint with a single version of Python | |
| name: mamba-test | |
| on: | |
| push: | |
| branches: [ main ] | |
| pull_request: | |
| branches: [ main ] | |
| workflow_dispatch: | |
| schedule: | |
| - cron: "0 2 * * 1" #run every Monday night at 2AM UTC | |
| permissions: | |
| contents: read | |
| jobs: | |
| mamba-test: | |
| runs-on: ubuntu-latest | |
| strategy: | |
| fail-fast: false | |
| matrix: | |
| python-version: ["3.9", "3.10", "3.11", "3.12"] | |
| #python-version: ["3.11"] | |
| defaults: | |
| run: | |
| shell: bash -el {0} | |
| steps: | |
| - uses: actions/checkout@v4 | |
| - name: provision-with-micromamba | |
| uses: mamba-org/setup-micromamba@v1 | |
| with: | |
| environment-file: environment.yml | |
| environment-name: ecmean | |
| cache-downloads: true | |
| cache-environment: false | |
| post-cleanup: environment | |
| condarc: | | |
| channels: | |
| - conda-forge | |
| create-args: >- | |
| python=${{ matrix.python-version }} | |
| - name: Install Flake8 | |
| run: | | |
| python -m pip install flake8 | |
| - name: Lint with flake8 | |
| run: | | |
| # stop the build if there are Python syntax errors or undefined names | |
| flake8 . --count --select=E9,F63,F7,F82 --show-source --statistics | |
| # exit-zero treats all errors as warnings. The GitHub editor is 127 chars wide | |
| flake8 . --count --exit-zero --max-complexity=10 --max-line-length=127 --statistics --exclude=__init__.py | |
| - name: Install Pytest | |
| run: | | |
| python -m pip install pytest | |
| - name: Test with pytest | |
| run: | | |
| python -m pytest | |
| coverage: | |
| needs: mamba-test | |
| runs-on: ubuntu-latest | |
| defaults: | |
| run: | |
| shell: bash -el {0} | |
| steps: | |
| - uses: actions/checkout@v4 | |
| - name: provision-with-micromamba | |
| uses: mamba-org/setup-micromamba@v1 | |
| with: | |
| environment-file: environment.yml | |
| environment-name: ecmean | |
| cache-downloads: true | |
| cache-environment: true | |
| - name: Install Coverage | |
| run: | | |
| python -m pip install pytest coverage coveralls | |
| - name: Run coverage | |
| run: | | |
| coverage run -m pytest | |
| coverage combine | |
| coverage lcov | |
| - name: Run coveralls | |
| uses: coverallsapp/github-action@v2 | |
| with: | |
| github-token: ${{ secrets.GITHUB_TOKEN }} | |
| path-to-lcov: coverage.lcov |