holohub-apps: Update for Holoscan SDK 2.3.0

recipes-devtools/holoscan/holohub-apps/0001-Add-install-rules.patch

@@ -44,7 +44,7 @@ index 8ad93dd..e8e4fd0 100644
  if(BUILD_TESTING)
    # Configure the yaml file to only play 10 frames
 diff --git a/applications/endoscopy_tool_tracking/cpp/CMakeLists.txt b/applications/endoscopy_tool_tracking/cpp/CMakeLists.txt
-index e8a7806..cec5fcb 100644
+index eacb93b..1b4f530 100644
 --- a/applications/endoscopy_tool_tracking/cpp/CMakeLists.txt
 +++ b/applications/endoscopy_tool_tracking/cpp/CMakeLists.txt
 @@ -53,6 +53,15 @@ add_custom_target(endoscopy_tool_tracking_deps
@@ -64,7 +64,7 @@ index e8a7806..cec5fcb 100644
  if(BUILD_TESTING)
 
 diff --git a/applications/endoscopy_tool_tracking/python/CMakeLists.txt b/applications/endoscopy_tool_tracking/python/CMakeLists.txt
-index 007f5a5..d3ce4af 100644
+index e26de61..8da0b0a 100644
 --- a/applications/endoscopy_tool_tracking/python/CMakeLists.txt
 +++ b/applications/endoscopy_tool_tracking/python/CMakeLists.txt
 @@ -13,6 +13,14 @@
@@ -103,12 +103,12 @@ index 36b5212..61b3d6c 100644
  if(BUILD_TESTING)
    add_test(NAME h264_endoscopy_tool_tracking_cpp_test
 diff --git a/applications/h264/h264_endoscopy_tool_tracking/python/CMakeLists.txt b/applications/h264/h264_endoscopy_tool_tracking/python/CMakeLists.txt
-index bd55e3c..762ecbc 100644
+index aa3c787..ca0ee29 100644
 --- a/applications/h264/h264_endoscopy_tool_tracking/python/CMakeLists.txt
 +++ b/applications/h264/h264_endoscopy_tool_tracking/python/CMakeLists.txt
-@@ -13,6 +13,14 @@
- # See the License for the specific language governing permissions and
- # limitations under the License.
+@@ -21,6 +21,14 @@ find_package(holoscan 2.1.0 REQUIRED CONFIG
+ add_library(nvidia_nim_imaging INTERFACE)
+ target_link_libraries(nvidia_nim_imaging INTERFACE holoscan::core holoscan::ops::holoviz holoscan::ops::lstm_tensor_rt_inference holoscan::ops::tensor_to_video_buffer holoscan::ops::tool_tracking_postprocessor)
 
 +# Install the application
 +file(RELATIVE_PATH install_path ${CMAKE_SOURCE_DIR} ${CMAKE_CURRENT_SOURCE_DIR})
@@ -120,11 +120,11 @@ index bd55e3c..762ecbc 100644
 +
  # Add testing
  if(BUILD_TESTING)
-   # To get the environment path
-diff --git a/applications/h264/h264_video_decode/CMakeLists.txt b/applications/h264/h264_video_decode/CMakeLists.txt
+   add_test(NAME h264_endoscopy_tool_tracking_python_test
+diff --git a/applications/h264/h264_video_decode/cpp/CMakeLists.txt b/applications/h264/h264_video_decode/cpp/CMakeLists.txt
 index 9e5be1e..bbc024d 100644
---- a/applications/h264/h264_video_decode/CMakeLists.txt
-+++ b/applications/h264/h264_video_decode/CMakeLists.txt
+--- a/applications/h264/h264_video_decode/cpp/CMakeLists.txt
++++ b/applications/h264/h264_video_decode/cpp/CMakeLists.txt
 @@ -51,6 +51,15 @@ if(HOLOHUB_DOWNLOAD_DATASETS)
    add_dependencies(h264_video_decode endoscopy_data)
  endif()
@@ -141,6 +141,25 @@ index 9e5be1e..bbc024d 100644
  # Add testing
  if(BUILD_TESTING)
    add_test(NAME h264_video_decode_cpp_test
+diff --git a/applications/h264/h264_video_decode/python/CMakeLists.txt b/applications/h264/h264_video_decode/python/CMakeLists.txt
+index b024ff3..8a6fdb0 100644
+--- a/applications/h264/h264_video_decode/python/CMakeLists.txt
++++ b/applications/h264/h264_video_decode/python/CMakeLists.txt
+@@ -17,6 +17,14 @@ cmake_minimum_required(VERSION 3.20)
+ find_package(holoscan 2.1.0 REQUIRED CONFIG
+              PATHS "/opt/nvidia/holoscan" "/workspace/holoscan-sdk/install")
+
++# Install the application
++file(RELATIVE_PATH install_path ${CMAKE_SOURCE_DIR} ${CMAKE_CURRENT_SOURCE_DIR})
++install(FILES
++  ${CMAKE_CURRENT_SOURCE_DIR}/h264_video_decode.py
++  ${CMAKE_CURRENT_SOURCE_DIR}/h264_video_decode.yaml
++  DESTINATION ${install_path}
++)
++
+ # Add testing
+ if(BUILD_TESTING)
+   add_test(NAME h264_video_decode_python_test
 diff --git a/applications/high_speed_endoscopy/cpp/CMakeLists.txt b/applications/high_speed_endoscopy/cpp/CMakeLists.txt
 index ea261e0..311a441 100644
 --- a/applications/high_speed_endoscopy/cpp/CMakeLists.txt
@@ -322,9 +341,18 @@ index 240fbb5..848bb1a 100644
  if(BUILD_TESTING)
    # To get the environment path
 diff --git a/applications/volume_rendering/CMakeLists.txt b/applications/volume_rendering/CMakeLists.txt
-index df8d721..aeb189f 100644
+index bdcb8c9..bad9c16 100644
 --- a/applications/volume_rendering/CMakeLists.txt
 +++ b/applications/volume_rendering/CMakeLists.txt
+@@ -15,4 +15,3 @@
+
+ add_subdirectory(cpp)
+ add_subdirectory(python)
+-
+diff --git a/applications/volume_rendering/cpp/CMakeLists.txt b/applications/volume_rendering/cpp/CMakeLists.txt
+index c9c5e51..d7a3088 100644
+--- a/applications/volume_rendering/cpp/CMakeLists.txt
++++ b/applications/volume_rendering/cpp/CMakeLists.txt
 @@ -54,3 +54,9 @@ if(BUILD_TESTING)
    set_tests_properties(volume_rendering_test PROPERTIES
                         PASS_REGULAR_EXPRESSION "Application has finished running.")
@@ -335,6 +363,25 @@ index df8d721..aeb189f 100644
 +install(TARGETS volume_rendering
 +  DESTINATION ${install_path}
 +)
+diff --git a/applications/volume_rendering/python/CMakeLists.txt b/applications/volume_rendering/python/CMakeLists.txt
+index 4e29a8d..5506f13 100644
+--- a/applications/volume_rendering/python/CMakeLists.txt
++++ b/applications/volume_rendering/python/CMakeLists.txt
+@@ -35,4 +35,12 @@ if(HOLOHUB_DOWNLOAD_DATASETS)
+     ALL
+   )
+   add_dependencies(volume_rendering volume_rendering_data)
+-endif()
+\ No newline at end of file
++endif()
++
++# Install the application
++file(RELATIVE_PATH install_path ${CMAKE_SOURCE_DIR} ${CMAKE_CURRENT_SOURCE_DIR})
++install(FILES
++  ${CMAKE_CURRENT_SOURCE_DIR}/volume_rendering.py
++  DESTINATION ${install_path}
++)
++
 diff --git a/cmake/pybind11_add_holohub_module.cmake b/cmake/pybind11_add_holohub_module.cmake
 index cb9bd6b..3f30510 100644
 --- a/cmake/pybind11_add_holohub_module.cmake

recipes-devtools/holoscan/holohub-apps/0003-Fix-ajantv2-dependencies.patch

@@ -18,11 +18,11 @@ index e8e4fd0..f92e12b 100644
 
  add_executable(endoscopy_out_of_body_detection
 diff --git a/applications/endoscopy_tool_tracking/cpp/CMakeLists.txt b/applications/endoscopy_tool_tracking/cpp/CMakeLists.txt
-index cec5fcb..4e6da91 100644
+index 1b4f530..152b9e6 100644
 --- a/applications/endoscopy_tool_tracking/cpp/CMakeLists.txt
 +++ b/applications/endoscopy_tool_tracking/cpp/CMakeLists.txt
 @@ -19,6 +19,8 @@ project(endoscopy_tool_tracking CXX)
- find_package(holoscan 0.5 REQUIRED CONFIG
+ find_package(holoscan 1.0 REQUIRED CONFIG
               PATHS "/opt/nvidia/holoscan" "/workspace/holoscan-sdk/install")
 
 +find_package(ajantv2 17.0 REQUIRED CONFIG)

recipes-devtools/holoscan/holohub-apps/0004-Remove-relative-gxf_extension-paths.patch

@@ -5,20 +5,20 @@ Subject: Remove relative gxf_extension paths
 
 
 diff --git a/applications/endoscopy_tool_tracking/cpp/endoscopy_tool_tracking.yaml b/applications/endoscopy_tool_tracking/cpp/endoscopy_tool_tracking.yaml
-index ca9f9bd..27511d9 100644
+index 5cb52f4..76db2f0 100644
 --- a/applications/endoscopy_tool_tracking/cpp/endoscopy_tool_tracking.yaml
 +++ b/applications/endoscopy_tool_tracking/cpp/endoscopy_tool_tracking.yaml
-@@ -20,7 +20,7 @@ extensions:
-   - libgxf_multimedia.so
-   - libgxf_serialization.so
-   - libgxf_stream_playback.so
+@@ -15,7 +15,7 @@
+ # limitations under the License.
+ ---
+ extensions:
 -  - gxf_extensions/lstm_tensor_rt_inference/libgxf_lstm_tensor_rt_inference.so
 +  - libgxf_lstm_tensor_rt_inference.so
  # Uncomment the following extension when using deltacast as a source
  #  - gxf_extensions/deltacast_videomaster/libgxf_videomaster.so
  # Uncomment the following extension when using yuan as source
 diff --git a/applications/endoscopy_tool_tracking/python/endoscopy_tool_tracking.yaml b/applications/endoscopy_tool_tracking/python/endoscopy_tool_tracking.yaml
-index a8b5bd6..04f8bbd 100644
+index 4247280..bf3e2cb 100644
 --- a/applications/endoscopy_tool_tracking/python/endoscopy_tool_tracking.yaml
 +++ b/applications/endoscopy_tool_tracking/python/endoscopy_tool_tracking.yaml
 @@ -15,8 +15,8 @@
@@ -30,8 +30,8 @@ index a8b5bd6..04f8bbd 100644
 +- libgxf_lstm_tensor_rt_inference.so
 +- libgxf_qcap_source.so
 
- aja:
-   width: 1920
+ visualizer: "holoviz" # "holoviz" or "vtk"
+
 diff --git a/applications/h264/h264_endoscopy_tool_tracking/cpp/h264_endoscopy_tool_tracking.yaml b/applications/h264/h264_endoscopy_tool_tracking/cpp/h264_endoscopy_tool_tracking.yaml
 index 57254ef..6b72dbe 100644
 --- a/applications/h264/h264_endoscopy_tool_tracking/cpp/h264_endoscopy_tool_tracking.yaml

recipes-devtools/holoscan/holohub-apps/0006-Enable-Emergent-apps.patch

@@ -5,7 +5,7 @@ Subject: Enable Emergent apps
 
 
 diff --git a/CMakeLists.txt b/CMakeLists.txt
-index 9bc72ec..bb1587e 100644
+index 096e5de..6cb6d84 100644
 --- a/CMakeLists.txt
 +++ b/CMakeLists.txt
 @@ -30,6 +30,7 @@ include(CTest)
@@ -17,11 +17,11 @@ index 9bc72ec..bb1587e 100644
  # Enable flow benchmarking
  option(FLOW_BENCHMARKING "Enable Flow Benchmarking" OFF)
 diff --git a/applications/CMakeLists.txt b/applications/CMakeLists.txt
-index b9288cf..24401a3 100644
+index 8f87822..f5d38d3 100644
 --- a/applications/CMakeLists.txt
 +++ b/applications/CMakeLists.txt
-@@ -47,8 +47,10 @@ add_holohub_application(endoscopy_tool_tracking DEPENDS
-
+@@ -50,8 +50,10 @@ add_holohub_application(endoscopy_tool_tracking_distributed DEPENDS
+                                   tool_tracking_postprocessor)
  add_subdirectory(h264)
 
 +if(HOLOHUB_ENABLE_EMERGENT)

recipes-devtools/holoscan/holohub-apps/0007-Fix-default-data-paths-in-python-apps.patch

@@ -18,10 +18,10 @@ index 97997aa..ac7a182 100644
          self.sample_data_path = data
 
 diff --git a/applications/endoscopy_tool_tracking/python/endoscopy_tool_tracking.py b/applications/endoscopy_tool_tracking/python/endoscopy_tool_tracking.py
-index 734fc52..f277dd1 100644
+index 5189001..62b7244 100644
 --- a/applications/endoscopy_tool_tracking/python/endoscopy_tool_tracking.py
 +++ b/applications/endoscopy_tool_tracking/python/endoscopy_tool_tracking.py
-@@ -65,7 +65,7 @@ class EndoscopyApp(Application):
+@@ -68,7 +68,7 @@ class EndoscopyApp(Application):
          self.source = source
 
          if data == "none":

recipes-devtools/holoscan/holohub-apps/desktop-icons/holohub-volume-rendering.desktop

@@ -2,6 +2,6 @@
 Type=Application
 Name=Holohub: Volume Rendering
 Comment=Holohub Volume Rendering Application
-Exec=rxvt -cd /opt/nvidia/holohub/applications -fg white -bg black -e volume_rendering/volume_rendering
+Exec=rxvt -cd /opt/nvidia/holohub/applications/volume_rendering/cpp -fg white -bg black -e ./volume_rendering
 Icon=holohub-volume-rendering
 Categories=Holoscan

recipes-devtools/holoscan/holohub-apps_git.bb

@@ -24,8 +24,8 @@ LICENSE = "Apache-2.0"
 LIC_FILES_CHKSUM = "file://${S}/LICENSE;md5=86d3f3a95c324c9479bd8986968f4327"
 
 SRC_URI = "git://github.com/nvidia-holoscan/holohub.git;branch=main;protocol=https"
-SRCREV = "557413ec76bf13961f48903952862ea83d04d8b6"
-PV = "2.2.0+git${SRCPV}"
+SRCREV = "4c1573261b60c7924c707d68e9d596939d660fd1"
+PV = "2.3.0+git${SRCPV}"
 
 SRC_URI += " \
     file://desktop-icons \