Skip to content

Issues: nf-core/tools

New functionality: nf-core config create
#2731 opened Feb 6, 2024 by jfy133
Open 1
[Project] Make nf-core create more customisable
#2340 opened Jun 27, 2023 by ewels
Open 3
[Project] Schema extensions
#2429 opened Sep 21, 2023 by ewels
Open
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

Sign up for GitHub

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

241 Open 770 Closed
241 Open 770 Closed
Author
Filter by author
Loading
Label
Filter by label
Loading
Use alt + click/return to exclude labels
or ⇧ + click/return for logical OR
Projects
Filter by project
Loading
Milestones
Filter by milestone
Loading
Assignee
Filter by who’s assigned
Sort
Sort by
Newest Oldest Most commented Least commented Recently updated Least recently updated Best match
Most reactions
👍 👎 😄 🎉 😕 ❤️ 🚀 👀

Issues list

Allow numbers in pipeline names enhancement
#3067 opened Jul 16, 2024 by adamrtalbot
Use resource limits instead of setting process directives in nf-test configuration enhancement
#3066 opened Jul 15, 2024 by adamrtalbot
Lint for pipeline nf-test contents enhancement
#3065 opened Jul 15, 2024 by adamrtalbot
Lint for tests/nextflow.config contents enhancement
#3064 opened Jul 15, 2024 by adamrtalbot
Lint contents of nf-test.config enhancement
#3063 opened Jul 15, 2024 by adamrtalbot
Lint unused import enhancement linting
#3057 opened Jul 11, 2024 by LouisLeNezet
modules test on a private modules server requires --git-remote bug Something isn't working
#3056 opened Jul 9, 2024 by SPPearce
linting for nf-test snapshot enhancement
#3049 opened Jul 4, 2024 by maxulysse
1
Subworkflow install failure still results in a 0 exit code bug Something isn't working
#3044 opened Jul 1, 2024 by jvfe
Non-CLI usage of nf-core download enhancement
#3043 opened Jun 28, 2024 by seedgeorge
1
CLI helper to select EDAM ontologies for module inputs / outputs command line tools Anything to do with the cli interfaces modules Related to tools for working with DSL2 modules
#3027 opened Jun 19, 2024 by ewels
Fetch bio.tools identifiers for module YAML file command line tools Anything to do with the cli interfaces modules Related to tools for working with DSL2 modules
#3026 opened Jun 19, 2024 by ewels
Lint for correct meta.yml tuple structure in modules and subworkflows enhancement modules Related to tools for working with DSL2 modules
#3021 opened Jun 13, 2024 by mirpedrol
1
Support NXF_SINGULARITY_LIBRARYDIR in nf-core download download nf-core download enhancement
#3019 opened Jun 7, 2024 by muffato
4
meta information not matching between main.nf and meta.yml should result in failure enhancement
#3011 opened May 30, 2024 by mahesh-panchal
nf-core lint should not complain when label is double quoted, or fix quotation bug Something isn't working
#3010 opened May 30, 2024 by mahesh-panchal
nf-core lint stack trace error list index out of range bug Something isn't working
#3000 opened May 24, 2024 by mahesh-panchal
1
Add native support for multiple org_path in modules and subworkflows directories enhancement
#2996 opened May 22, 2024 by AlexVCaron
1
3
Add pipeline nf-test tests nf-test pipeline-testing
#2994 opened May 22, 2024 by mirpedrol
Lean down CLI for remote component repositories command line tools Anything to do with the cli interfaces
#2993 opened May 21, 2024 by AlexVCaron
4
Improve error message when modules directory is not empty bug Something isn't working
#2986 opened May 15, 2024 by matthdsm
nf-core sync will modify the template incorrectly if the pipeline prefix is uppercase bug Something isn't working
#2981 opened May 14, 2024 by human9
2
Add nf-schema comment to the plugin import and sample sheet channel generation schema template nf-core pipeline/component template
#2980 opened May 13, 2024 by ramirobarrantes
1
Add link to docs in warning about missing GitHub authentication token enhancement
#2977 opened May 13, 2024 by asp8200
[create]: Make textual tests pass locally enhancement
#2975 opened May 10, 2024 by mirpedrol
ProTip! Mix and match filters to narrow down what you’re looking for.