Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

Sign up for GitHub

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

feat(wave): adding profile seqera_containers #1291

Draft
wants to merge 11 commits into
base: dev
Choose a base branch
from
Draft

feat(wave): adding profile seqera_containers #1291

Show file tree
Hide file tree
Changes from 9 commits
Commits
Show all changes
11 commits
Select commit Hold shift + click to select a range
b78b8e3
feat(wave): adding profile wave
maxulysse Apr 30, 2024
d505e0d
sort
maxulysse Apr 30, 2024
4293c6d
Update nextflow.config
maxulysse Apr 30, 2024
acf329a
update CHANGELOG
maxulysse Apr 30, 2024
b052937
Merge branch 'dev' into profile_wave
maxulysse May 6, 2024
a37afbf
Apply suggestions from code review
drpatelh May 13, 2024
d7b0037
Update CHANGELOG.md
drpatelh May 13, 2024
e0bcc22
Apply suggestions from code review
drpatelh May 13, 2024
7275ce3
Merge branch 'dev' into profile_wave
drpatelh May 13, 2024
8b0e4a5
Update usage.md
drpatelh May 13, 2024
c27b63f
Update nextflow.config
drpatelh May 13, 2024
File filter

Filter by extension

Filter by extension
Conversations
Failed to load comments.
Loading
Jump to
Jump to file
Failed to load files.
Loading
Diff view
Diff view
1 change: 1 addition & 0 deletions CHANGELOG.md
View file
Open in desktop
Original file line number Diff line number Diff line change
Expand Up @@ -67,6 +67,7 @@ Thank you to everyone else that has contributed by reporting bugs, enhancements
- [PR #1278](https://github.com/nf-core/rnaseq/pull/1278) - Delocalise pseudo quant workflow
- [PR #1280](https://github.com/nf-core/rnaseq/pull/1280) - Reorganise pipeline level tests into flat directory structure
- [PR #1283](https://github.com/nf-core/rnaseq/pull/1283) - Add output files to nf-test snapshot
- [PR #1291](https://github.com/nf-core/rnaseq/pull/1291) - Add `seqera_containers` profile
- [PR #1293](https://github.com/nf-core/rnaseq/pull/1293) - Update subworkflow utils_nfcore_pipeline
- [PR #1297](https://github.com/nf-core/rnaseq/pull/1297) - Important! Template update for nf-core/tools v2.14.1

Expand Down
7 changes: 7 additions & 0 deletions nextflow.config
View file
Open in desktop
Original file line number Diff line number Diff line change
Expand Up @@ -256,6 +256,13 @@ profiles {
wave.freeze = true
wave.strategy = 'conda,container'
drpatelh marked this conversation as resolved.
Show resolved Hide resolved
}
seqera_containers {
apptainer.ociAutoPull = true
singularity.ociAutoPull = true
drpatelh marked this conversation as resolved.
Show resolved Hide resolved
wave.enabled = true
wave.freeze = true
wave.strategy = 'conda'
}
gitpod {
executor.name = 'local'
executor.cpus = 4
Expand Down
Loading