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Fix linting from a comment

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Wrong results without error if saved_trimmed = true
Fix linting from a comment #1274: Issue comment #1481 (comment) created by panzhang666666
December 26, 2024 02:34 3s
December 26, 2024 02:34 3s
Pipe line Error with HiSAT2 Aligner
Fix linting from a comment #1273: Issue comment #1288 (comment) created by XianSY
December 25, 2024 01:23 2s
December 25, 2024 01:23 2s
Update CHANGELOG.md
Fix linting from a comment #1272: Issue comment #1479 (comment) created by nf-core-bot
December 20, 2024 15:55 3s
December 20, 2024 15:55 3s
Important! Template update for nf-core/tools v3.1.0
Fix linting from a comment #1271: Issue comment #1468 (comment) created by nf-core-bot
December 20, 2024 13:10 2s
December 20, 2024 13:10 2s
Update from master
Fix linting from a comment #1270: Issue comment #1477 (comment) created by nf-core-bot
December 20, 2024 11:34 2s
December 20, 2024 11:34 2s
Dev -> Master for 3.18.0
Fix linting from a comment #1269: Issue comment #1476 (comment) created by nf-core-bot
December 20, 2024 10:16 4s
December 20, 2024 10:16 4s
Fix log publishing around umitools/ umicollapse
Fix linting from a comment #1268: Issue comment #1475 (comment) created by nf-core-bot
December 19, 2024 13:19 2s
December 19, 2024 13:19 2s
Bump versions to 3.18.0
Fix linting from a comment #1267: Issue comment #1474 (comment) created by nf-core-bot
December 19, 2024 11:03 5s
December 19, 2024 11:03 5s
Bump STAR modules
Fix linting from a comment #1266: Issue comment #1473 (comment) created by nf-core-bot
December 18, 2024 18:18 2s
December 18, 2024 18:18 2s
Pipeline prefixes X to samplenames
Fix linting from a comment #1265: Issue comment #1446 (comment) created by pinin4fjords
December 18, 2024 15:26 3s
December 18, 2024 15:26 3s
osx arm64/v8 failure on profile test,docker
Fix linting from a comment #1264: Issue comment #1448 (comment) created by pinin4fjords
December 18, 2024 15:25 3s
December 18, 2024 15:25 3s
December 18, 2024 15:22 3s
The pipeline skips most steps when the sortmerna index is provided
Fix linting from a comment #1262: Issue comment #1454 (comment) created by davidecarlson
December 18, 2024 12:04 3s
December 18, 2024 12:04 3s
The pipeline skips most steps when the sortmerna index is provided
Fix linting from a comment #1261: Issue comment #1454 (comment) created by pinin4fjords
December 18, 2024 11:57 2s
December 18, 2024 11:57 2s
Fix prepare_genome subworkflow for sortmerna
Fix linting from a comment #1260: Issue comment #1471 (comment) created by nf-core-bot
December 18, 2024 11:51 2s
December 18, 2024 11:51 2s
Remove reference to unused "skip_sample_count" value in email templates
Fix linting from a comment #1259: Issue comment #1459 (comment) created by nf-core-bot
December 17, 2024 17:43 3s
December 17, 2024 17:43 3s
Update subworkflow to account for fix to bad argument handling
Fix linting from a comment #1258: Issue comment #1470 (comment) created by nf-core-bot
December 17, 2024 17:31 2s
December 17, 2024 17:31 2s
Minor docs fix
Fix linting from a comment #1257: Issue comment #1469 (comment) created by nf-core-bot
December 17, 2024 17:02 3s
December 17, 2024 17:02 3s
The parameter "save_trimmed=true" mistakenly activates merging mode of fastp
Fix linting from a comment #1256: Issue comment #1452 (comment) created by pinin4fjords
December 17, 2024 16:11 3s
December 17, 2024 16:11 3s
Factor out umi handling
Fix linting from a comment #1255: Issue comment #1466 (comment) created by pinin4fjords
December 12, 2024 17:35 2s
December 12, 2024 17:35 2s
Factor out umi handling
Fix linting from a comment #1254: Issue comment #1466 (comment) created by pinin4fjords
December 12, 2024 09:08 43s
December 12, 2024 09:08 43s
Unify SummarizedExperiment output
Fix linting from a comment #1253: Issue comment #1465 (comment) created by grst
December 12, 2024 07:14 3s
December 12, 2024 07:14 3s
Add test suite for UMI handling functionality
Fix linting from a comment #1252: Issue comment #1467 (comment) created by pinin4fjords
December 11, 2024 18:40 3s
December 11, 2024 18:40 3s
Immune repertoire reconstruction from bulk RNAseq data
Fix linting from a comment #1251: Issue comment #1464 (comment) created by npechl
December 11, 2024 07:56 2s
December 11, 2024 07:56 2s
Immune repertoire reconstruction from bulk RNAseq data
Fix linting from a comment #1250: Issue comment #1464 (comment) created by MatthiasZepper
December 10, 2024 18:10 2s
December 10, 2024 18:10 2s