test: Ignore intersect.beds

Which are unstable
nf-core · Dec 19, 2024 · 6b4fbf5 · 6b4fbf5
1 parent d4ad53b
commit 6b4fbf5
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Showing 11 changed files with 2 additions and 21 deletions.
diff --git a/tests/.nftignore b/tests/.nftignore
@@ -26,6 +26,7 @@ pipeline_info/*.{html,json,txt,yml}
 **/*.pdf
 
 transcript_identification/homer/*_tagdir/*
+transcript_identification/intersect/*_intersect.bed
 
 quality_control/bbsplit/*.stats.txt
 quality_control/**

diff --git a/workflows/tests/aligner/bowtie2.nf.test.snap b/workflows/tests/aligner/bowtie2.nf.test.snap
@@ -318,8 +318,6 @@
                 "jurkat.bed:md5,5e170e72c4e2b27a7bb0a6de7b735c1c",
                 "jurkat.peaks.txt:md5,100cb761b6b7abad3901775e499a6aa1",
                 "versions.yml:md5,7c0dcd0a18b3c753def73b96cb825792",
-                "cd4_intersect.bed:md5,d41d8cd98f00b204e9800998ecf8427e",
-                "jurkat_intersect.bed:md5,d41d8cd98f00b204e9800998ecf8427e"
             ]
         ],
         "meta": {

diff --git a/workflows/tests/aligner/bwa.nf.test.snap b/workflows/tests/aligner/bwa.nf.test.snap
@@ -455,8 +455,6 @@
                 "jurkat.bed:md5,41908723fa423a78476feb2e7627a3a4",
                 "jurkat.peaks.txt:md5,1247c21dbc92f8114dbcb2320fa09a3a",
                 "versions.yml:md5,7c0dcd0a18b3c753def73b96cb825792",
-                "cd4_intersect.bed:md5,c45718bf5c21eb28b810d4800296728b",
-                "jurkat_intersect.bed:md5,d41d8cd98f00b204e9800998ecf8427e",
                 "cd4_merged.bed:md5,4d8f9dc54f886f379b95609908a08662",
                 "jurkat_merged.bed:md5,cae11a1bfb707ea2df5fe612ae7268c8",
                 "cd4_chr21_1_unidirectional_peaks.bed:md5,76ee3b56d3e518f88a34b42039ec719c",
@@ -469,4 +467,4 @@
         },
         "timestamp": "2024-12-18T07:07:22.737667"
     }
-}
+}
diff --git a/workflows/tests/aligner/bwamem2.nf.test.snap b/workflows/tests/aligner/bwamem2.nf.test.snap
@@ -345,8 +345,6 @@
                 "jurkat.bed:md5,383cfaf10535dbe5d7f47607e345f4cb",
                 "jurkat.peaks.txt:md5,d4914194eca6f06aadfe7eed08ab1bb8",
                 "versions.yml:md5,7c0dcd0a18b3c753def73b96cb825792",
-                "cd4_intersect.bed:md5,a5d31a685d89293ae64daff9a9054568",
-                "jurkat_intersect.bed:md5,d41d8cd98f00b204e9800998ecf8427e",
                 "cd4_merged.bed:md5,9ace0ca4f1544bb0949355a20de98e6b",
                 "jurkat_merged.bed:md5,f1dde43c4ad9dec972ff9fa38cc6f2fe",
                 "cd4_chr21_1_unidirectional_peaks.bed:md5,0193e58943726af89bfd00e9da2536d8",

diff --git a/workflows/tests/aligner/hisat2.nf.test.snap b/workflows/tests/aligner/hisat2.nf.test.snap
@@ -339,8 +339,6 @@
                 "jurkat.bed:md5,7298daa579135dfb8924067abaa2ba4e",
                 "jurkat.peaks.txt:md5,f514028265e7c4881f155f860211cbba",
                 "versions.yml:md5,7c0dcd0a18b3c753def73b96cb825792",
-                "cd4_intersect.bed:md5,d41d8cd98f00b204e9800998ecf8427e",
-                "jurkat_intersect.bed:md5,d41d8cd98f00b204e9800998ecf8427e",
                 "cd4_merged.bed:md5,d71436c8df71a82bfbe0e9afb74145df",
                 "jurkat_merged.bed:md5,bd6458d033db136523d32ffba259f564",
                 "cd4_chr21_1_unidirectional_peaks.bed:md5,1c4f3b80b9b606855d0e6b1609fc90a3",

diff --git a/workflows/tests/aligner/star.nf.test.snap b/workflows/tests/aligner/star.nf.test.snap
@@ -398,8 +398,6 @@
                 "jurkat.bed:md5,7e59345b336cc8a9c5f96bf7df7b3d06",
                 "jurkat.peaks.txt:md5,91e7580ebde81aceaf3bb1b1c3c3db1c",
                 "versions.yml:md5,7c0dcd0a18b3c753def73b96cb825792",
-                "cd4_intersect.bed:md5,a5d31a685d89293ae64daff9a9054568",
-                "jurkat_intersect.bed:md5,d41d8cd98f00b204e9800998ecf8427e",
                 "cd4_merged.bed:md5,07860f90354c4f5f66eddbed3e5d3bd2",
                 "jurkat_merged.bed:md5,95a5279ec2387dfa0b4c2e7820083527",
                 "cd4_chr21_1_unidirectional_peaks.bed:md5,26765aa153cb1d6bb668f5786da5763e",

diff --git a/workflows/tests/inputs/gff/main.nf.test.snap b/workflows/tests/inputs/gff/main.nf.test.snap
@@ -330,8 +330,6 @@
                 "jurkat.bed:md5,383cfaf10535dbe5d7f47607e345f4cb",
                 "jurkat.peaks.txt:md5,d4914194eca6f06aadfe7eed08ab1bb8",
                 "versions.yml:md5,7c0dcd0a18b3c753def73b96cb825792",
-                "cd4_intersect.bed:md5,a5d31a685d89293ae64daff9a9054568",
-                "jurkat_intersect.bed:md5,d41d8cd98f00b204e9800998ecf8427e",
                 "cd4_merged.bed:md5,9ace0ca4f1544bb0949355a20de98e6b",
                 "jurkat_merged.bed:md5,f1dde43c4ad9dec972ff9fa38cc6f2fe",
                 "cd4_chr21_1_unidirectional_peaks.bed:md5,0193e58943726af89bfd00e9da2536d8",

diff --git a/workflows/tests/inputs/gzipped_gff/main.nf.test.snap b/workflows/tests/inputs/gzipped_gff/main.nf.test.snap
@@ -330,8 +330,6 @@
                 "jurkat.bed:md5,383cfaf10535dbe5d7f47607e345f4cb",
                 "jurkat.peaks.txt:md5,d4914194eca6f06aadfe7eed08ab1bb8",
                 "versions.yml:md5,7c0dcd0a18b3c753def73b96cb825792",
-                "cd4_intersect.bed:md5,a5d31a685d89293ae64daff9a9054568",
-                "jurkat_intersect.bed:md5,d41d8cd98f00b204e9800998ecf8427e",
                 "cd4_merged.bed:md5,9ace0ca4f1544bb0949355a20de98e6b",
                 "jurkat_merged.bed:md5,f1dde43c4ad9dec972ff9fa38cc6f2fe",
                 "cd4_chr21_1_unidirectional_peaks.bed:md5,0193e58943726af89bfd00e9da2536d8",

diff --git a/workflows/tests/inputs/only_gff/main.nf.test.snap b/workflows/tests/inputs/only_gff/main.nf.test.snap
@@ -333,8 +333,6 @@
                 "jurkat.bed:md5,383cfaf10535dbe5d7f47607e345f4cb",
                 "jurkat.peaks.txt:md5,d4914194eca6f06aadfe7eed08ab1bb8",
                 "versions.yml:md5,7c0dcd0a18b3c753def73b96cb825792",
-                "cd4_intersect.bed:md5,a5d31a685d89293ae64daff9a9054568",
-                "jurkat_intersect.bed:md5,d41d8cd98f00b204e9800998ecf8427e",
                 "cd4_merged.bed:md5,9ace0ca4f1544bb0949355a20de98e6b",
                 "jurkat_merged.bed:md5,f1dde43c4ad9dec972ff9fa38cc6f2fe",
                 "cd4_chr21_1_unidirectional_peaks.bed:md5,0193e58943726af89bfd00e9da2536d8",

diff --git a/workflows/tests/transcript_indentification/grohmm/only_gff/main.nf.test.snap b/workflows/tests/transcript_indentification/grohmm/only_gff/main.nf.test.snap
@@ -378,8 +378,6 @@
                 "jurkat.bed:md5,7c37a46578dac48f8bf15155cd78b214",
                 "jurkat.peaks.txt:md5,4cc5640d1e7c84db1116d6514265a4c3",
                 "versions.yml:md5,7c0dcd0a18b3c753def73b96cb825792",
-                "cd4_intersect.bed:md5,af5866394906d9262d99ff691f0a63db",
-                "jurkat_intersect.bed:md5,c4ee0f73a5d2f4f210cad1090237fb8b",
                 "cd4_merged.bed:md5,f79432639c3f1b86787947e8d7242c75",
                 "jurkat_merged.bed:md5,a94e1ec47f0564122ae1eb0f73be4ebd",
                 "cd4_chr21_1_unidirectional_peaks.bed:md5,60e0da7e5691e55d86eb9df9f6ea0c46",

diff --git a/workflows/tests/transcript_indentification/grohmm/tuning/main.nf.test.snap b/workflows/tests/transcript_indentification/grohmm/tuning/main.nf.test.snap
@@ -369,8 +369,6 @@
                 "jurkat.bed:md5,383cfaf10535dbe5d7f47607e345f4cb",
                 "jurkat.peaks.txt:md5,d4914194eca6f06aadfe7eed08ab1bb8",
                 "versions.yml:md5,7c0dcd0a18b3c753def73b96cb825792",
-                "cd4_intersect.bed:md5,ca03c888e605b1de100c3af9f975051e",
-                "jurkat_intersect.bed:md5,c30da7861bb57a96e051bf70ee882887",
                 "cd4_merged.bed:md5,9ace0ca4f1544bb0949355a20de98e6b",
                 "jurkat_merged.bed:md5,f1dde43c4ad9dec972ff9fa38cc6f2fe",
                 "cd4_chr21_1_unidirectional_peaks.bed:md5,0193e58943726af89bfd00e9da2536d8",