chore: Bump fastq_align_hisat2

nf-core · Dec 23, 2024 · 128d094 · 128d094
1 parent d6afd86
commit 128d094
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Showing 38 changed files with 1,074 additions and 609 deletions.
diff --git a/modules.json b/modules.json
@@ -120,7 +120,7 @@
                     },
                     "hisat2/align": {
                         "branch": "master",
-                        "git_sha": "2c6b1144ed58b6184ad58fc4e6b6a90219b4bf4f",
+                        "git_sha": "666652151335353eef2fcd58880bcef5bc2928e1",
                         "installed_by": ["fastq_align_hisat2"]
                     },
                     "homer/findpeaks": {
@@ -206,17 +206,17 @@
                     },
                     "samtools/flagstat": {
                         "branch": "master",
-                        "git_sha": "04fbbc7c43cebc0b95d5b126f6d9fe4effa33519",
+                        "git_sha": "2d20463181b1c38981a02e90d3084b5f9fa8d540",
                         "installed_by": ["bam_stats_samtools"]
                     },
                     "samtools/idxstats": {
                         "branch": "master",
-                        "git_sha": "04fbbc7c43cebc0b95d5b126f6d9fe4effa33519",
+                        "git_sha": "2d20463181b1c38981a02e90d3084b5f9fa8d540",
                         "installed_by": ["bam_stats_samtools"]
                     },
                     "samtools/index": {
                         "branch": "master",
-                        "git_sha": "46eca555142d6e597729fcb682adcc791796f514",
+                        "git_sha": "b13f07be4c508d6ff6312d354d09f2493243e208",
                         "installed_by": ["bam_dedup_stats_samtools_umitools", "bam_sort_stats_samtools"]
                     },
                     "samtools/merge": {
@@ -226,12 +226,12 @@
                     },
                     "samtools/sort": {
                         "branch": "master",
-                        "git_sha": "46eca555142d6e597729fcb682adcc791796f514",
+                        "git_sha": "b7800db9b069ed505db3f9d91b8c72faea9be17b",
                         "installed_by": ["bam_sort_stats_samtools"]
                     },
                     "samtools/stats": {
                         "branch": "master",
-                        "git_sha": "04fbbc7c43cebc0b95d5b126f6d9fe4effa33519",
+                        "git_sha": "2d20463181b1c38981a02e90d3084b5f9fa8d540",
                         "installed_by": ["bam_stats_samtools"]
                     },
                     "star/align": {
@@ -251,7 +251,7 @@
                     },
                     "umitools/dedup": {
                         "branch": "master",
-                        "git_sha": "0eacd714effe5aac1c1de26593873960b3346cab",
+                        "git_sha": "0b27602842d3d79fd0e8db79f4afa764967fc3d1",
                         "installed_by": ["bam_dedup_stats_samtools_umitools"]
                     },
                     "untar": {
@@ -270,7 +270,7 @@
                 "nf-core": {
                     "bam_dedup_stats_samtools_umitools": {
                         "branch": "master",
-                        "git_sha": "46eca555142d6e597729fcb682adcc791796f514",
+                        "git_sha": "0b27602842d3d79fd0e8db79f4afa764967fc3d1",
                         "installed_by": ["subworkflows"]
                     },
                     "bam_rseqc": {
@@ -280,7 +280,7 @@
                     },
                     "bam_sort_stats_samtools": {
                         "branch": "master",
-                        "git_sha": "46eca555142d6e597729fcb682adcc791796f514",
+                        "git_sha": "763d4b5c05ffda3ac1ac969dc67f7458cfb2eb1d",
                         "installed_by": [
                             "fastq_align_bowtie2",
                             "fastq_align_bwa",
@@ -290,7 +290,7 @@
                     },
                     "bam_stats_samtools": {
                         "branch": "master",
-                        "git_sha": "0eacd714effe5aac1c1de26593873960b3346cab",
+                        "git_sha": "763d4b5c05ffda3ac1ac969dc67f7458cfb2eb1d",
                         "installed_by": ["bam_dedup_stats_samtools_umitools", "bam_sort_stats_samtools"]
                     },
                     "fastq_align_bowtie2": {
@@ -305,7 +305,7 @@
                     },
                     "fastq_align_hisat2": {
                         "branch": "master",
-                        "git_sha": "c789476080a150f87066ca3ed42a622339a26c0b",
+                        "git_sha": "763d4b5c05ffda3ac1ac969dc67f7458cfb2eb1d",
                         "installed_by": ["subworkflows"]
                     },
                     "fastq_align_star": {

diff --git a/modules/nf-core/hisat2/align/environment.yml b/modules/nf-core/hisat2/align/environment.yml
diff --git a/modules/nf-core/hisat2/align/main.nf b/modules/nf-core/hisat2/align/main.nf
diff --git a/modules/nf-core/hisat2/align/meta.yml b/modules/nf-core/hisat2/align/meta.yml
diff --git a/modules/nf-core/samtools/flagstat/environment.yml b/modules/nf-core/samtools/flagstat/environment.yml
diff --git a/modules/nf-core/samtools/flagstat/main.nf b/modules/nf-core/samtools/flagstat/main.nf
diff --git a/modules/nf-core/samtools/flagstat/meta.yml b/modules/nf-core/samtools/flagstat/meta.yml