Pull request - trying to add BSSNPer

[AliaMW]

PR checklist

• This comment contains a description of changes (with reason).
• If you've fixed a bug or added code that should be tested, add tests!
  • If you've added a new tool - add to the software_versions process and a regex to scrape_software_versions.py
  • If you've added a new tool - have you followed the pipeline conventions in the contribution docs
  • If necessary, also make a PR on the nf-core/methylseq branch on the nf-core/test-datasets repository.
• Make sure your code lints (nf-core lint .).
• Ensure the test suite passes (nextflow run . -profile test,docker).
• Usage Documentation in docs/usage.md is updated.
• Output Documentation in docs/output.md is updated.
• CHANGELOG.md is updated.
• README.md is updated (including new tool citations and authors/contributors).

[sateeshperi]

hi @AliaMW could i ask about the status of this PR?

[sateeshperi]

hi @AliaMW the pipeline will have changed much to accommodate these changes. If you are still interested in contributing this process, I would recommend incorporating BSSNPer as an nf-core module and then importing it into the pipeline rather than a local process.

I will close this PR for now. Kindly reach out if you need any clarification or help. Thanks