Remove completion handler + add emits

Signed-off-by: Paolo Di Tommaso <[email protected]>
nextflow-io · May 18, 2024 · 27ff768 · 27ff768
1 parent fe97300
commit 27ff768
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Showing 3 changed files with 2 additions and 8 deletions.
diff --git a/main.nf b/main.nf
@@ -56,9 +56,3 @@ workflow {
   MULTIQC( RNASEQ.out, params.multiqc )
 }
 
-/* 
- * completion handler
- */
-workflow.onComplete {
-	log.info ( workflow.success ? "\nDone! Open the following report in your browser --> $params.outdir/multiqc_report.html\n" : "Oops .. something went wrong" )
-}
diff --git a/modules/fastqc/main.nf b/modules/fastqc/main.nf
@@ -9,7 +9,7 @@ process FASTQC {
     tuple val(sample_id), path(reads)
 
     output:
-    path "fastqc_${sample_id}_logs" 
+    path "fastqc_${sample_id}_logs", emit: logs
 
     script:
     """

diff --git a/modules/multiqc/main.nf b/modules/multiqc/main.nf
@@ -9,7 +9,7 @@ process MULTIQC {
     path(config) 
 
     output:
-    path('multiqc_report.html')
+    path('multiqc_report.html'), emit: report
 
     script:
     """
-Original file line number
+Diff line change
@@ Expand Up / @@ -9,7 +9,7 @@ process FASTQC { @@
         tuple val(sample_id), path(reads)
         output:
-        path "fastqc_${sample_id}_logs"
+        path "fastqc_${sample_id}_logs", emit: logs
         script:
         """
@@ Expand Down @@