Code

Workflow output definition#4784

Code

Merged

pditommaso merged 54 commits intomasternextflow-io/nextflow:masterfrom 4670-workflow-outputsnextflow-io/nextflow:4670-workflow-outputsCopy head branch name to clipboardMay 17, 2024

+1,919-839

Commits

Commits on Feb 28, 2024

• Add initial prototype

  Show description for 0de777a
  bentsherman

  committed
  0de777a

• Fix race condition

  Show description for 14beedc
  bentsherman

  committed
  14beedc

• Simplify output DSL

  Show description for 062b421
  bentsherman

  committed
  062b421

Commits on Feb 29, 2024

• Support default publish options in path method

  Show description for 06a5872
  bentsherman

  committed
  06a5872

Commits on Mar 19, 2024

• Rename OutputDsl -> WorkflowPublishDsl

  Show description for eecf619
  bentsherman

  committed
  eecf619

Commits on Mar 20, 2024

• Replace process selector with channel/topic selectors, add e2e test

  Show description for b238a81
  bentsherman

  committed
  b238a81

• cleanup PublishOp

  Show description for d0fa980
  bentsherman

  committed
  d0fa980

Commits on Mar 22, 2024

• Add topic operator (not working)

  Show description for 8279743
  bentsherman

  committed
  8279743

Commits on Mar 26, 2024

• Merge branch 'master' into 4670-workflow-outputs

  pditommaso

  committed
  7681e2d

• Add topic op test

  Show description for 88d7ead
  pditommaso

  committed
  88d7ead

Commits on Mar 27, 2024

• clean up e2e test

  Show description for 1e3d539
  bentsherman

  committed
  1e3d539

• Fix issue with topic operator

  Show description for 925bc67
  bentsherman

  committed
  925bc67

• Apply suggestions from review

  Show description for e4608b3
  bentsherman

  committed
  e4608b3

• Add output directory option to CLI, config, output DSL

  Show description for 1e69f3e
  bentsherman

  committed
  1e69f3e

• Validate publish options

  Show description for 01b0570
  bentsherman

  committed
  01b0570

• Update docs

  Show description for c43afad
  bentsherman

  committed
  c43afad

• Add defaults to directory statement

  Show description for 570da27
  bentsherman

  committed
  570da27

Commits on Mar 28, 2024

• Update docs

  Show description for 0ad12eb
  bentsherman

  committed
  0ad12eb

Commits on Mar 30, 2024

• Apply suggestions from review

  Show description for 3e0823b
  bentsherman

  committed
  3e0823b

• Fix workflow binding

  Show description for 5a1a7bb
  bentsherman

  committed
  5a1a7bb

Commits on Apr 6, 2024

• Fix dynamic path name

  Show description for 3bdd0fe
  bentsherman

  committed
  3bdd0fe

Commits on Apr 10, 2024

• Apply suggestions from review

  Show description for 59d83c0
  bentsherman

  committed
  59d83c0

Commits on Apr 12, 2024

• Merge branch 'master' into 4670-workflow-outputs

  pditommaso

  authored
  5beca46

• Add publish: section to process

  Show description for b67376c
  bentsherman

  committed
  b67376c

• Update docs

  Show description for 65d9111
  bentsherman

  committed
  65d9111

• Add publish options to output DSL

  Show description for 35df924
  bentsherman

  committed
  35df924

• Change publish op to handle multiple task dirs

  Show description for 509f271
  bentsherman

  committed
  509f271

Commits on Apr 15, 2024

• Fix error when no output block is specified

  Show description for 6fcbf6f
  bentsherman

  committed
  6fcbf6f

• Rename output -> publish, rule -> target

  Show description for 550766a
  bentsherman

  committed
  550766a

• Disallow absolute path in publish target

  Show description for 72d8a6f
  bentsherman

  committed
  72d8a6f

• Add feature flag

  Show description for 370aa0b
  bentsherman

  committed
  370aa0b

• Allow multi-channel output to be published

  Show description for 76af5c9
  bentsherman

  committed
  76af5c9

Commits on Apr 16, 2024

• Add overwrite modes for deep / lenient / standard hash comparison

  Show description for 0833e11
  bentsherman

  committed
  0833e11

Commits on Apr 17, 2024

• Merge branch 'master' into 4670-workflow-outputs

  pditommaso

  authored
  4614f26

• Factor out HashBuilder from CacheHelper

  Show description for 02745f7
  bentsherman

  committed
  02745f7

Commits on Apr 18, 2024

• Add index file definition

  Show description for 0583b3d
  bentsherman

  committed
  0583b3d

• Fix failing tests

  Show description for e60403d
  bentsherman

  committed
  e60403d

Commits on Apr 22, 2024

• Apply suggestions from review

  Show description for 12c2720
  bentsherman

  committed
  12c2720

Commits on Apr 24, 2024

• Don't write index file if no records were published

  Show description for d998878
  bentsherman

  committed
  d998878

• Redirect to null to disable publishing

  Show description for 95a110a
  bentsherman

  committed
  95a110a

• Remove ternary hack, require parentheses instead

  Show description for 7953e79
  bentsherman

  committed
  7953e79

Commits on Apr 29, 2024

• Replace publish path option with ability to reroute targets in publish section

  Show description for 856209b
  bentsherman

  committed
  856209b

Commits on May 1, 2024

• Apply suggestions from review

  Show description for 50484d9
  bentsherman

  committed
  50484d9

Commits on May 3, 2024

• Merge branch 'master' into 4670-workflow-outputs

  pditommaso

  authored
  ab9118e

Commits on May 9, 2024

• Merge branch 'master' into 4670-workflow-outputs

  pditommaso

  authored
  84e6382

Commits on May 12, 2024

• Merge branch 'master' into 4670-workflow-outputs

  pditommaso

  authored
  2b80f47

• Minor change [ci skip]

  Show description for d504e45
  pditommaso

  committed
  d504e45

Commits on May 13, 2024

• Apply suggestions from review

  Show description for 6185d84
  bentsherman

  committed
  6185d84

Commits on May 15, 2024

• Fix typo [ci skip]

  Show description for 79cc68c
  pditommaso

  committed
  79cc68c

• Merge branch 'master' into 4670-workflow-outputs

  pditommaso

  authored
  a70af4e

• Add shorthand for publishing single file to index

  Show description for ef4305d
  bentsherman

  committed
  ef4305d

Commits on May 16, 2024

• Fold PublishIndexOp into PublishOp, add test for OutputDsl,

  Show description for b8cf823
  bentsherman

  committed
  b8cf823

• Update index file default for single file

  Show description for 02ba0c7
  bentsherman

  committed
  02ba0c7

• Use file base name for default index

  Show description for 0db73c8
  bentsherman

  committed
  0db73c8