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Installation Instructions

This package is set up to be installed with the normal python approach:

git clone https://github.com/neuromorphs/ant-lmu-wta-block
pip install -e ant-lmu-wta-block

Important: remember to include the -e option! Otherwise every time you make a change to the code in the repository, you'll have to re-install it!

Developer Guidelines

Since this is a project that multiple people will be contributing to, we're going to attempt to follow some basic software development guidelines. In particular, we will:

  • use git branches to develop new features
  • use pytest to test the features
  • use flake8 to enforce basic coding standards

Branches

If you are adding a new feature to the code, start by creating a new git branch. This is sort of a separate version of the code base where you can make changes without interfering with what other people are doing:

git checkout -b my_feature_name

Now make your changes and make new files and do whatever development you are planning on doing. When you are happy with your changes, you now need to tell git about which files you changed and added by doing a git add:

git add some_file_I_changed.py
git add directory/some_other_file_in_a_subdirectory.py
git add a_totally_new_file.py

Once the various files that make up your changes have been added, you need to also do a git commit, which group the additions together with a comment that tells other people what you've done.

git commit -m "Added a new example feature"

Once changes have been added and committed, you can go back to the main version of your code by using the git checkout command.

git checkout main

And you can return to your branch similarly:

git checkout my_feature_name

Finally, you can do a git push to send your changes off to Github so that other people can have access to your changes:

git push

The first time you do this for a new branch, you will be asked to change the command to git push --set-upstream origin my_feature_name. This is just to confirm that you want to create that new branch on github as well.

Warning: if you are not used to using git, there can be a bit of a learning curve. The instructions above should all work, but it is quite easy to do some of the commands wrong and make things very confusing. There is a reason that this XKCD comic exists: https://xkcd.com/1597/ and the advice given in that comic holds pretty well. If you do run into problems, ask for help.

Testing with pytest

The pytest framework gives a quick way of defining a bunch of scripts that can be automatically run to check that the system is working as expected. Ideally, each new feature added to the software will have an accompanying set of tests that make sure the feature works as expected. Tests can be at a very small scale (i.e. testing one particular function or class -- a "unit" test) or at larger scales (i.e. functional / integration / end-to-end tests). Basically, any time there's something where there's a clear "if I do X then I should get Y as an output" sort of thing, that's a good indication that a test should be written for that.

Tests are stored in the tests subdirectory of the module that they are for. The file names should start with test_. Each test is a separate function whose name starts with test_. If the function exits normally, then the test passes. If it does not (i.e. if there's an assert failure or some other Exception is raised), then the test fails.

To install pytest, do pip install pytest. You can run all the tests by going to the tests directory and running

pytest

To run just the tests in one file, do

pytest test_filename.py

To run one particular test inside one file, do

pytest test_filename.py::test_one_particular_test

Whenever you have finished working on a particular feature and want to have it included in the main branch, first make sure that 1) you have new tests for that feature, 2) the new tests pass, and 3) all the old tests also still pass.

Coding style and flake8

As one final programming aspect, we'll also try to follow the standard style guide for Python code: https://www.python.org/dev/peps/pep-0008/

A tool for enforcing this is flake8, which can be installed with pip install flake8. If you run flake8 filename it will give you a list of style-guide violations. If you get no output at all, then your code is following the style guide.

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A Pure-Python implementation of an LMU/WTA block

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