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Merge from dev #75

Merged
merged 41 commits into from
Sep 14, 2023
Merged

Merge from dev #75

merged 41 commits into from
Sep 14, 2023

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bschilder
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rworkflows 0.99.13

New features

  • Merge PR Switch to automatically set up GITHUB_TOKEN #66 by @js2264 to eliminate the PAT_GITHUB secret setup step.
  • Merge PR skip vignettes when building if run_vignettes: ${{ false }} #71 by @js2264 to skip vignettes when building if run_vignettes.
  • Add fun emojis to action.
  • Add vignette for checking Sweave (.Rnw) files can be rendered.
  • action.yml
    • Add new args to control latex: tinytex_installer, tinytex_version
    • Install extra latex deps using one step for all OS via tinytex R package.
  • construct_runners
    • Simplify arguments so that user doesn't have to pass OS names.
    • When an arg like bioc is of length one, the same value is automatically
      applied across all 3 OS.
  • bioconductor.Rmd
    • Add vignette specifically for Bioconductor packages.
  • use_workflow
    • Split name arg into two args: name + template,
      so that you can create multiple separate workflow files
      using the same template.
    • Add new args to control latex: tinytex_installer, tinytex_version
    • New internal subfunctions:
      • save_yaml
      • check_bioc_version
      • check_r_version
    • New exported subfunction: construct_cont
  • Transition BiocPkgTools + biocViews to Suggests
    • Based on recc from CRAN maintainers, as they do not consistently
      install/update Bioc packages on the CRAN server.
  • fill_yaml
    • Simplify code.
    • Add subfunction omit_if_default to omit tinytex args from yaml.

Bug fixes

  • Add "devel" as trigger branch in all 3 workflows.
  • Harmonise github_token parameter docs between
    action.yml and use_workflow.

@bschilder bschilder self-assigned this Sep 14, 2023
@bschilder bschilder merged commit c6e7bb9 into master Sep 14, 2023
0 of 12 checks passed
@bschilder bschilder linked an issue Oct 23, 2023 that may be closed by this pull request
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