switched to laplace approximation for proposal in smcpy optimizer #42
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| # roughly following https://packaging.python.org/en/latest/guides/publishing-package-distribution-releases-using-github-actions-ci-cd-workflows/ | |
| name: Pip Build and PyPI Deployment | |
| on: [push] | |
| jobs: | |
| pip_build: | |
| runs-on: ubuntu-latest | |
| steps: | |
| - name: Checkout repository and submodules | |
| uses: actions/checkout@v2 | |
| with: | |
| submodules: recursive | |
| - name: Set up Python 3.9 | |
| uses: actions/setup-python@v2 | |
| with: | |
| python-version: 3.9 | |
| - name: Install MPI | |
| run: | | |
| sudo apt-get update | |
| sudo apt-get install -y mpich libmpich-dev | |
| - name: Build using pip | |
| run: | | |
| pip install . | |
| - name: Run tests (use pip instead of repo) | |
| run: | | |
| cd .. | |
| cp -r bingo/tests . | |
| mv bingo bingo_full | |
| tests/.run_tests.sh normal | |
| mv bingo_full bingo | |
| deploy: | |
| needs: pip_build | |
| if: github.ref == 'refs/heads/master' | |
| runs-on: ubuntu-latest | |
| steps: | |
| - name: Checkout repository and submodules | |
| uses: actions/checkout@v2 | |
| with: | |
| submodules: recursive | |
| - name: Set up Python 3.9 | |
| uses: actions/setup-python@v2 | |
| with: | |
| python-version: 3.9 | |
| - name: Install MPI | |
| run: | | |
| sudo apt-get update | |
| sudo apt-get install -y mpich libmpich-dev | |
| - name: Install dependencies | |
| run: | | |
| python -m pip install --upgrade pip | |
| pip install pytest pytest-cov pytest-mock | |
| pip install coveralls | |
| pip install build | |
| pip install -r requirements.txt | |
| - name: Build bingocpp | |
| run: | | |
| ./.build_bingocpp.sh | |
| - name: Build PyPI package | |
| run: | | |
| python -m build | |
| - name: Remove wheel (was built for testing purposes) | |
| run: | | |
| cd dist | |
| rm *.whl | |
| cd .. | |
| - name: Deploy to TestPyPI | |
| uses: pypa/gh-action-pypi-publish@master | |
| with: | |
| user: __token__ | |
| password: ${{ secrets.TEST_PYPI_API_TOKEN }} | |
| repository_url: https://test.pypi.org/legacy/ | |
| - name: Deploy to PyPI (only on tagged commits) | |
| if: startsWith(github.ref, 'refs/tags') | |
| uses: pypa/gh-action-pypi-publish@master | |
| with: | |
| user: __token__ | |
| password: ${{ secrets.PYPI_API_TOKEN }} |