final ci fixes

.github/workflows/R-CMD-check.yaml

@@ -66,7 +66,7 @@ jobs:
           RHUB_PLATFORM: linux-x86_64-ubuntu-gcc
         run: |
           Rscript -e "install.packages('pak')"
-          sysreqs=$(Rscript -e "cat(pak::pkg_sysreqs('.')[['install_scripts']])")
+          sysreqs=$(Rscript -e "cat(pak::pkg_sysreqs('.', dependencies = TRUE)[['install_scripts']])")
           sudo -s eval "$sysreqs"
 
       - name: Install dependencies
@@ -75,43 +75,6 @@ jobs:
           remotes::install_cran("rcmdcheck")
         shell: Rscript {0}
 
-#      - uses: r-lib/actions/setup-r-dependencies@v2
-#        with:
-#          extra-packages: |
-#            any::rcmdcheck
-#            any::BH
-#            any::RcppEigen
-#            any::Matrix@>=1.6-2
-#            emmeans=?ignore-before-r=4.3.0
-#          needs: check
-#
-#     - name: Install dependencies
-#       run: |
-#         remotes::install_deps(dependencies = TRUE)
-#         remotes::install_cran("rcmdcheck")
-#         remotes::install_cran("pak")
-#       shell: Rscript {0}
-
-#     - name: Install system dependencies
-#       run: |
-#         pak::sysreqs_fix_installed()
-#         remotes::install_cran("rcmdcheck")
-#         remotes::install_cran("pak")
-#       shell: Rscript {0}
-#
-#      - name: Install system dependencies
-#        if: runner.os == 'Linux'
-#        env:
-#          RHUB_PLATFORM: linux-x86_64-ubuntu-gcc
-#        run: |
-#          Rscript -e "remotes::install_github('r-hub/sysreqs')"
-#          sysreqs=$(Rscript -e "cat(sysreqs::sysreq_commands('DESCRIPTION'))")
-#          sudo -s eval "$sysreqs"
-#          sudo apt-get install jags cargo libudunits2-dev libgdal-dev
-# cargo: for gifski
-# libudunits2-dev   for units (transformr)
-# libgdal-dev       for sf (transformr)
-
       - name: Check
         env:
           _R_CHECK_CRAN_INCOMING_REMOTE_: false