chore: Fix pre-commit on F41 and update remaining dependencies #18492

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Run time

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Job	Run time
Ubuntu 22.04 (gcc)	8m 41s
Ubuntu 22.04 (Qt 6.2, gcc)	11m 4s
macOS 12 x64	10m 32s
macOS 12 arm64	5m 50s
Windows 2019 (MSVC)	16m 5s
Update manifest file on download server	33s
	52m 45s