MitoZ 3

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About:

• MitoZ provides a "one-click" solution to get annotated mitogenomes from raw data fastq files.

News

• MitoZ 3.5-beta has been released (https://github.com/linzhi2013/MitoZ/releases/tag/3.5-beta), and can be installed via the https://github.com/linzhi2013/MitoZ/wiki/Installation#5-source-codes method. See https://github.com/linzhi2013/MitoZ/releases/tag/3.5-beta for new features and fixed bugs
• Distribute my working MitoZ environment using Conda-Pack to try to avoid the missing Perl module problem. It is worth a try if you have the missing Perl module problem!
• Add Docker support for MitoZ (see the Installation part)
• Share the Singuliarty image of the latest version of MitoZ via Dropbox (see the Installation part)
• Added a tutorial at https://github.com/linzhi2013/MitoZ/wiki/Tutorial and explained the resulting files
• MitoZ 3.4 has come out (and rebuilt for the Conda version too linzhi2013#151) and fixed a few bugs, it's recommended to update to this version!

See

• Installation: https://github.com/linzhi2013/MitoZ/wiki/Installation and linzhi2013#152
• New Features: https://github.com/linzhi2013/MitoZ/wiki/New-Features
• Tutorial: https://github.com/linzhi2013/MitoZ/wiki/Tutorial
• Documentation: https://github.com/linzhi2013/MitoZ/wiki
• Latest release: https://github.com/linzhi2013/MitoZ/releases/

Bugs and Questions

• Have a look at https://github.com/linzhi2013/MitoZ/issues and https://github.com/linzhi2013/MitoZ/wiki/Known-issues for known bugs or issues.

• Please try the latest version first if you find some bugs in the old versions

  • to do that, you should specify the version of MitoZ when you use the mamba/conda command (please refer to the installation instruction), as I found out that many people still download the older versions.

• I have been updating the documentation from time to time, so it may be good for you to check the documentation again every after some time.

• In case there are still bugs in the latest version, please firstly search https://github.com/linzhi2013/MitoZ/issues and the Wiki to check whether similar questions have been raised by other users. If no related issues and answers are found, then please raise a new issue. Thank you!

• Any feedbacks are wellcome!

Citations

• Meng G, Li Y, Yang C, Liu S. MitoZ: a toolkit for animal mitochondrial genome assembly, annotation and visualization. Nucleic acids research. 2019 Jun 20;47(11):e63-. https://doi.org/10.1093/nar/gkz173
• See also https://github.com/linzhi2013/MitoZ/wiki/Citations