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v0.3.17
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@lpantano lpantano released this 13 Jul 16:56
· 197 commits to master since this release
v0.3.17
0c71d53
  • Normalize the read of the tool outputs.
  • Add docs with autodoc plugin.
  • Validator by @vbarrera.
  • Improve examples commands and test coverage.
  • Only counts sequences with Filter == Pass during stats.
  • Counts cmd add nucleotide information when --add-extra option is on.
  • Fix error in stats that open the file in addition mode.
  • Importer for sRNAbench just convert lines from input to GFF format.
  • Skip lines with non-valid UID or miRNAs not in reference at counts cmd.
  • Fix separators in counts cmd.
  • Make --sps optional.
  • Add synthetic data with known isomiRs to data set.
  • Allow extra columns when converting to counts TSV file.
  • Allow extra attributes for isomir-sea as well.
  • Allow extra attributes to show the nts
    that change in each isomiR type.
  • Fix Expression attrb when join gff files.Thanks @AlisR.
  • Print help when no files are giving to any subcommand.
  • Fix bug for duplicated isomiRs tags. Thanks @AlisR.
  • Fix bug in order of merged gff file. Thanks @AlisR.
  • Add module to read GFF/GTF line in body.py
  • Add version line to stats output
  • Improve PROST! importer
  • Fix output for isomiRs package
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