Update a single PTI example notebook (#159)

* update a single example notebook * zarr.open mode to "r" * remove unused imports
mehta-lab · Mar 4, 2024 · 83bf24a · 83bf24a
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diff --git a/examples/documentation/PTI_experiment/PTI_Experiment_Recon3D_anisotropic_target_small.ipynb b/examples/documentation/PTI_experiment/PTI_Experiment_Recon3D_anisotropic_target_small.ipynb
diff --git a/examples/documentation/PTI_experiment/README.md b/examples/documentation/PTI_experiment/README.md
@@ -1,2 +1,6 @@
 The notebooks in this folder require data from this source:
-https://www.ebi.ac.uk/biostudies/bioimages/studies/S-BIAD1063
+https://www.ebi.ac.uk/biostudies/bioimages/studies/S-BIAD1063
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+One notebook `PTI_Experiment_Recon3D_anisotropic_target_small.ipynb` will run as is with the latest version of the code and a ~500 MB download from https://www.ebi.ac.uk/biostudies/files/S-BIAD1063/PTI-BIA/Anisotropic_target_small.zip.
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+The remaining notebooks are not maintained, so they will require a download and an old version of this repository from https://github.com/mehta-lab/waveorder/tree/1.0.0b0.