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  1. raphael-group/hotnet2 raphael-group/hotnet2 Public

    HotNet2 is an algorithm for finding significantly altered subnetworks in a large gene interaction network

    Python 100 43

  2. raphael-group/wext raphael-group/wext Public

    A Weighted Exact Test for Mutually Exclusive Mutations in Cancer

    Python 21 5

  3. raphael-group/magi raphael-group/magi Public

    A web application from the Raphael Lab for mutation annotation and genome interpretation.

    JavaScript 20 5

  4. lrgr/munk lrgr/munk Public

    A MUlti-species Network Kernel algorithm to embed proteins from a target network into a source network, creating cross-species representations for various comparative and predictive tasks

    Python 9 2

  5. lrgr/multifactorial-immune-response lrgr/multifactorial-immune-response Public

    Multifactorial modeling of response to checkpoint inhibitor immunotherapy from tumor, immune, and clinical features

    Python 14 6

  6. lrgr/sigma lrgr/sigma Public

    SigMa is a probabilistic model for the sequential dependencies of mutation signatures

    Python 17 7