Remove outdated useless test file

matchms · Oct 25, 2024 · 0fada74 · 0fada74
1 parent b2ce4c0
commit 0fada74
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Showing 5 changed files with 8 additions and 81 deletions.
diff --git a/tests/test_CalculateScoresBetweenAllIonmodes.py b/tests/test_CalculateScoresBetweenAllIonmodes.py
@@ -1,10 +1,10 @@
 from ms2deepscore.benchmarking.CalculateScoresBetweenAllIonmodes import CalculateScoresBetweenAllIonmodes
-from tests.test_user_worfklow import load_processed_spectrums, TEST_RESOURCES_PATH
+from tests.create_test_spectra import pesticides_test_spectra, TEST_RESOURCES_PATH
 
 
 def test_calculate_scores_between_all_ionmodes():
     """Test that all dfs are created and have the correct shape"""
-    spectra = load_processed_spectrums()
+    spectra = pesticides_test_spectra()
     positive_mode_spectra = [spectrum.set("ionmode", "positive") for spectrum in spectra[:40]]
     negative_mode_spectra = [spectrum.set("ionmode", "negative") for spectrum in spectra[40:]]
     # Load pretrained model

diff --git a/tests/test_ms2deepscore.py b/tests/test_ms2deepscore.py
@@ -2,15 +2,15 @@
 import numpy as np
 from ms2deepscore import MS2DeepScore
 from ms2deepscore.models import load_model
-from tests.test_user_worfklow import load_processed_spectrums
+from tests.create_test_spectra import pesticides_test_spectra
 
 
 TEST_RESOURCES_PATH = Path(__file__).parent / 'resources'
 
 
 def get_test_ms2deepscore_instance():
     """Load data and models for MS2DeepScore unit tests."""
-    spectrums = load_processed_spectrums()
+    spectrums = pesticides_test_spectra()
 
     # Load pretrained model
     model_file = TEST_RESOURCES_PATH / "testmodel.pt"

diff --git a/tests/test_ms2deepscore_evaluated.py b/tests/test_ms2deepscore_evaluated.py
@@ -3,15 +3,15 @@
 from ms2deepscore import MS2DeepScoreEvaluated
 from ms2deepscore.SettingsMS2Deepscore import SettingsEmbeddingEvaluator
 from ms2deepscore.models import load_model, LinearModel, EmbeddingEvaluationModel
-from tests.test_user_worfklow import load_processed_spectrums
+from tests.create_test_spectra import pesticides_test_spectra
 
 
 TEST_RESOURCES_PATH = Path(__file__).parent / 'resources'
 
 
 def get_test_ms2deepscore_evaluated_instance():
     """Load data and models for MS2DeepScore unit tests."""
-    spectrums = load_processed_spectrums()
+    spectrums = pesticides_test_spectra()
 
     # Load pretrained model
     model_file = TEST_RESOURCES_PATH / "testmodel.pt"

diff --git a/tests/test_ms2deepscoremontecarlo.py b/tests/test_ms2deepscoremontecarlo.py
@@ -3,7 +3,7 @@
 import pytest
 from ms2deepscore import MS2DeepScoreMonteCarlo
 from ms2deepscore.models import load_model
-from tests.test_user_worfklow import load_processed_spectrums
+from tests.create_test_spectra import pesticides_test_spectra
 
 
 TEST_RESOURCES_PATH = Path(__file__).parent / 'resources'
@@ -14,7 +14,7 @@ def ms2_deep_score_instance():
     n_ensembles = 5
     average_type = "median"
     """Load data and models for MS2DeepScore unit tests."""
-    spectrums = load_processed_spectrums()
+    spectrums = pesticides_test_spectra()
 
     # Load pretrained model
     model_file = TEST_RESOURCES_PATH / "testmodel.pt"

diff --git a/tests/test_user_worfklow.py b/tests/test_user_worfklow.py