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@marbl

MarBL

Maryland Bioinformatics Labs

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  1. CHM13 CHM13 Public

    The complete sequence of a human genome

    887 97

  2. canu canu Public

    A single molecule sequence assembler for genomes large and small.

    C++ 649 178

  3. Krona Krona Public

    Interactively explore metagenomes and more from a web browser.

    JavaScript 459 101

  4. Mash Mash Public

    Fast genome and metagenome distance estimation using MinHash

    C++ 381 90

  5. merqury merqury Public

    k-mer based assembly evaluation

    Shell 272 19

  6. verkko verkko Public

    Python 272 27

Repositories

Showing 10 of 38 repositories
  • canu Public

    A single molecule sequence assembler for genomes large and small.

    marbl/canu’s past year of commit activity
    C++ 649 178 10 3 Updated Jul 22, 2024
  • HG002 Public

    A complete diploid human genome

    marbl/HG002’s past year of commit activity
    83 4 1 0 Updated Jul 22, 2024
  • HG002-issues Public

    HG002 human reference genome issue tracking and polishing

    marbl/HG002-issues’s past year of commit activity
    10 0 38 0 Updated Jul 22, 2024
  • verkko Public
    marbl/verkko’s past year of commit activity
    Python 272 27 20 2 Updated Jul 22, 2024
  • meryl-utility Public

    A collection of miscellaneous code used by Meryl, Canu and others.

    marbl/meryl-utility’s past year of commit activity
    C 1 3 0 0 Updated Jul 19, 2024
  • T2T-Browser Public

    Genome browser hub for the T2T genomes and resources

    marbl/T2T-Browser’s past year of commit activity
    HTML 9 0 0 0 Updated Jul 12, 2024
  • CHM13 Public

    The complete sequence of a human genome

    marbl/CHM13’s past year of commit activity
    887 97 21 (1 issue needs help) 0 Updated Jul 3, 2024
  • merqury Public

    k-mer based assembly evaluation

    marbl/merqury’s past year of commit activity
    Shell 272 19 21 (1 issue needs help) 0 Updated Jun 28, 2024
  • parsnp Public

    Parsnp was designed to align the core genome of hundreds to thousands of bacterial genomes within a few minutes to few hours. Input can be both draft assemblies and finished genomes, and output includes variant (SNP) calls, core genome phylogeny and multi-alignments. Parsnp leverages contextual information provided by multi-alignments surroundin…

    marbl/parsnp’s past year of commit activity
    C++ 123 25 25 0 Updated Jun 28, 2024
  • seqrequester Public

    A tool for summarizing, extracting, generating and modifying DNA sequences.

    marbl/seqrequester’s past year of commit activity
    C 23 4 3 0 Updated Jun 26, 2024
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