Infer object-dtype for if extra_property depends on mask size (#7136) #16
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| # Workflow to build and test wheels | |
| name: Test | |
| on: [push, pull_request, merge_group] | |
| permissions: | |
| contents: read | |
| jobs: | |
| test_skimage_linux: | |
| name: linux-cp${{ matrix.python-version }}-${{ matrix.OPTIONS_NAME }} | |
| runs-on: ubuntu-latest | |
| strategy: | |
| # Ensure that a wheel builder finishes even if another fails | |
| fail-fast: false | |
| matrix: | |
| python-version: ["3.9", "3.10", "3.11"] | |
| PIP_FLAGS: [""] | |
| MINIMUM_REQUIREMENTS: [0] | |
| BUILD_DOCS: [1] | |
| PYTHONOPTIMIZE: [0] | |
| TEST_EXAMPLES: [0] | |
| OPTIONAL_DEPS: [0] | |
| OPTIONS_NAME: ["default"] | |
| INSTALL_FROM_SDIST: [0] | |
| WITHOUT_POOCH: [0] | |
| SKIMAGE_TEST_STRICT_WARNINGS_GLOBAL: [0] | |
| EAGER_IMPORT: [0] | |
| include: | |
| - platform_id: manylinux_x86_64 | |
| python-version: 3.9 | |
| MINIMUM_REQUIREMENTS: 1 | |
| BUILD_DOCS: 0 | |
| OPTIONAL_DEPS: 0 | |
| EAGER_IMPORT: 1 | |
| # Test minimum requirements (don't build docs there is a problem | |
| # with dask and astropy) | |
| OPTIONS_NAME: "mini-req-eager-import" | |
| - platform_id: manylinux_x86_64 | |
| python-version: 3.9 | |
| MINIMUM_REQUIREMENTS: 1 | |
| OPTIONAL_DEPS: 1 | |
| BUILD_DOCS: 0 | |
| OPTIONS_NAME: "mini-req-optional-deps" | |
| - platform_id: manylinux_x86_64 | |
| python-version: 3.11 | |
| PIP_FLAGS: "--pre" | |
| SKIMAGE_TEST_STRICT_WARNINGS_GLOBAL: 1 | |
| # test prereleases | |
| OPTIONS_NAME: "pre" | |
| - platform_id: manylinux_x86_64 | |
| python-version: 3.9 | |
| BUILD_DOCS: 1 | |
| OPTIONAL_DEPS: 1 | |
| OPTIONS_NAME: "optional-deps" | |
| - platform_id: manylinux_x86_64 | |
| python-version: 3.9 | |
| PYTHONOPTIMIZE: 2 | |
| WITHOUT_POOCH: 1 | |
| BUILD_DOCS: 0 | |
| OPTIONS_NAME: "optimize and no pooch" | |
| - platform_id: manylinux_x86_64 | |
| python-version: 3.9 | |
| INSTALL_FROM_SDIST: 1 | |
| OPTIONS_NAME: "install-from-sdist" | |
| steps: | |
| - name: Checkout scikit-image | |
| uses: actions/checkout@v3 | |
| - name: Setup Python | |
| uses: actions/setup-python@v3 | |
| with: | |
| python-version: ${{ matrix.python-version}} | |
| - name: Build package | |
| env: | |
| # Set variables here that are used by the build script below | |
| # (including those used within tools/github/before_install.sh) | |
| MINIMUM_REQUIREMENTS: ${{ matrix.MINIMUM_REQUIREMENTS }} | |
| PIP_FLAGS: ${{ matrix.PIP_FLAGS }} | |
| INSTALL_FROM_SDIST: ${{ matrix.INSTALL_FROM_SDIST }} | |
| run: | | |
| set -ex | |
| source tools/github/before_install.sh | |
| set -ex | |
| if [[ $INSTALL_FROM_SDIST == "1" ]]; then | |
| python -m build --no-isolation --skip-dependency-check --sdist . | |
| pip install dist/scikit_image-*.tar.gz | |
| else | |
| pip install -vv --no-build-isolation .; | |
| fi | |
| - name: Run tests | |
| env: | |
| # Set variables here that are used by the run script below | |
| # (including those used within tools/github/script.sh) | |
| # Also includes the EAGER_IMPORT and | |
| # SKIMAGE_TEST_STRICT_WARNINGS_GLOBAL env vars that skimage checks. | |
| PIP_FLAGS: ${{ matrix.PIP_FLAGS }} | |
| BUILD_DOCS: ${{ matrix.BUILD_DOCS }} | |
| TEST_EXAMPLES: ${{ matrix.TEST_EXAMPLES }} | |
| OPTIONAL_DEPS: ${{ matrix.OPTIONAL_DEPS }} | |
| INSTALL_FROM_SDIST: ${{ matrix.INSTALL_FROM_SDIST }} | |
| EAGER_IMPORT: ${{ matrix.EAGER_IMPORT }} | |
| SKIMAGE_TEST_STRICT_WARNINGS_GLOBAL: ${{ matrix.SKIMAGE_TEST_STRICT_WARNINGS_GLOBAL }} | |
| WITHOUT_POOCH: ${{ matrix.WITHOUT_POOCH }} | |
| run: | | |
| source tools/github/script.sh | |
| - name: Check benchmarks | |
| run: | | |
| asv check -v -E existing | |
| test_skimage_macos: | |
| name: macos-cp${{ matrix.python-version }} | |
| runs-on: macos-latest | |
| strategy: | |
| # Ensure that a wheel builder finishes even if another fails | |
| fail-fast: false | |
| matrix: | |
| python-version: ["3.9", "3.10", "3.11"] | |
| OPTIONAL_DEPS: [1] | |
| BUILD_DOCS: [1] | |
| OPTIONS_NAME: ["default"] | |
| include: | |
| - python-version: "3.9" | |
| OPTIONAL_DEPS: 0 | |
| exclude: | |
| # Problem with SimpleITK and py 3.9 | |
| - python-version: "3.9" | |
| OPTIONAL_DEPS: 1 | |
| env: | |
| TEST_EXAMPLES: 0 | |
| CC: /usr/bin/clang | |
| CXX: /usr/bin/clang++ | |
| CPPFLAGS: "-Xpreprocessor -fopenmp" | |
| CFLAGS: "-Wno-implicit-function-declaration -I/usr/local/opt/libomp/include" | |
| CXXFLAGS: "-I/usr/local/opt/libomp/include" | |
| LDFLAGS: "-Wl,-rpath,/usr/local/opt/libomp/lib -L/usr/local/opt/libomp/lib -lomp" | |
| steps: | |
| - name: Checkout scikit-image | |
| uses: actions/checkout@v3 | |
| - name: Setup Python | |
| uses: actions/setup-python@v3 | |
| with: | |
| python-version: ${{ matrix.python-version}} | |
| - name: OSX configuration | |
| run: | | |
| # OpenMP is not present on macOS by default | |
| set -ex | |
| brew install libomp | |
| - name: Build package | |
| run: | | |
| set -ex | |
| source tools/github/before_install.sh | |
| python -m build --no-isolation --sdist | |
| pip install -vv --no-build-isolation .; | |
| - name: Run tests | |
| env: | |
| # Note: TEST_EXAMPLES is not in the matrix. | |
| # It gets inherited from the job-level env. | |
| OPTIONAL_DEPS: ${{ matrix.OPTIONAL_DEPS }} | |
| BUILD_DOCS: ${{ matrix.BUILD_DOCS }} | |
| run: | | |
| source tools/github/script.sh | |
| - name: Check benchmarks | |
| run: | | |
| asv check -v -E existing |