causalregnet

This is a library for simulating realistic single-cell RNA sequencing data based on a given causal structure, scalable to the dimension of genome-wide gene perturbation screens.

Implementation of method developed in "Simulation-based Benchmarking of Causal Structure Learning in Gene Perturbation Experiments".

Installation guide

1. Download the package from GitHub

git clone https://github.com/luka-kovacevic/causalregnet

2. Navigate to the package

cd causalregnet/

3. Check your environment (ensure it's the same one you're using to run code)

4. Install the package

pip install .