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DissMatricesforPRIMER
DissMatricesforPRIMER
 
 
16S_Inoculum_phylasorted_genus_otu_rarefied.csv
16S_Inoculum_phylasorted_genus_otu_rarefied.csv
 
 
16S_Inoculum_phylasorted_genus_zotu_rarefied.csv
16S_Inoculum_phylasorted_genus_zotu_rarefied.csv
 
 
16S_Inoculum_phylasorted_rarefied_otu.csv
16S_Inoculum_phylasorted_rarefied_otu.csv
 
 
16S_Inoculum_phylasorted_zotu_rarefied.csv
16S_Inoculum_phylasorted_zotu_rarefied.csv
 
 
16S_otuvzotu.csv
16S_otuvzotu.csv
 
 
BarPlots_Family_Inoculum_16S_ESV.R
BarPlots_Family_Inoculum_16S_ESV.R
 
 
BarPlots_Family_Inoculum_16S_OTU.R
BarPlots_Family_Inoculum_16S_OTU.R
 
 
BarPlots_Family_Inoculum_fungi_ESV.R
BarPlots_Family_Inoculum_fungi_ESV.R
 
 
BarPlots_Family_Inoculum_fungi_OTU.R
BarPlots_Family_Inoculum_fungi_OTU.R
 
 
BarPlots_Genus_Inoculum_16S_ESV.R
BarPlots_Genus_Inoculum_16S_ESV.R
 
 
BarPlots_Genus_Inoculum_16S_OTU.R
BarPlots_Genus_Inoculum_16S_OTU.R
 
 
BarPlots_Genus_Inoculum_fungi_ESV.R
BarPlots_Genus_Inoculum_fungi_ESV.R
 
 
BarPlots_Genus_Inoculum_fungi_OTU.R
BarPlots_Genus_Inoculum_fungi_OTU.R
 
 
Barplots_facetwrap_ESVandOTU.R
Barplots_facetwrap_ESVandOTU.R
 
 
Betadiversity_zotusvotus_16SandITS2.R
Betadiversity_zotusvotus_16SandITS2.R
 
 
Figure1_alphaandbetadiversity_panel.R
Figure1_alphaandbetadiversity_panel.R
 
 
Figure2_richnessandnmdspanel_zotusvotus.R
Figure2_richnessandnmdspanel_zotusvotus.R
 
 
Fungi_Inoculum_familysorted_otu.csv
Fungi_Inoculum_familysorted_otu.csv
 
 
Fungi_Inoculum_familysorted_zotu.csv
Fungi_Inoculum_familysorted_zotu.csv
 
 
Fungi_Inoculum_genus_phylasorted_otu.csv
Fungi_Inoculum_genus_phylasorted_otu.csv
 
 
Fungi_Inoculum_genus_phylasorted_zotu.csv
Fungi_Inoculum_genus_phylasorted_zotu.csv
 
 
ITS2_OTUvZOTUall.csv
ITS2_OTUvZOTUall.csv
 
 
MockCommunity_otuvzotu.R
MockCommunity_otuvzotu.R
 
 
NMDS_zotusvotus_16SandITS2_T3.R
NMDS_zotusvotus_16SandITS2_T3.R
 
 
OTU_inoculum_bacteria.csv
OTU_inoculum_bacteria.csv
 
 
README.md
README.md
 
 
Richness_figure_otuvzotu_16SandITS2.R
Richness_figure_otuvzotu_16SandITS2.R
 
 
T1_otu_mockandnegs.csv
T1_otu_mockandnegs.csv
 
 
T1_zotu_mockandnegs.csv
T1_zotu_mockandnegs.csv
 
 
T2_otu_mockandnegs.csv
T2_otu_mockandnegs.csv
 
 
T2_zotu_mockandnegs.csv
T2_zotu_mockandnegs.csv
 
 
T3_otu_mockandnegs.csv
T3_otu_mockandnegs.csv
 
 
T3_zotu_mockandnegs.csv
T3_zotu_mockandnegs.csv
 
 
Taxonomycorrelations_ESVandOTU_bacteria_topgenera.R
Taxonomycorrelations_ESVandOTU_bacteria_topgenera.R
 
 
Taxonomycorrelations_ESVandOTU_fungi_topgenera.R
Taxonomycorrelations_ESVandOTU_fungi_topgenera.R
 
 
Taxonomycorrelations_bacteria_ESV_genusover1.R
Taxonomycorrelations_bacteria_ESV_genusover1.R
 
 
Taxonomycorrelations_bacteria_OTU_genusover1.R
Taxonomycorrelations_bacteria_OTU_genusover1.R
 
 
Taxonomycorrelations_fungi_ESV_genusover1.R
Taxonomycorrelations_fungi_ESV_genusover1.R
 
 
Taxonomycorrelations_fungi_OTU_genusover1.R
Taxonomycorrelations_fungi_OTU_genusover1.R
 
 
alpha_otu_T1_fungi.csv
alpha_otu_T1_fungi.csv
 
 
alpha_otu_T2_fungi.csv
alpha_otu_T2_fungi.csv
 
 
alpha_otu_T3_fungi.csv
alpha_otu_T3_fungi.csv
 
 
alpha_otu_survey1and2_fungi.csv
alpha_otu_survey1and2_fungi.csv
 
 
alpha_zotuT1_fungi.csv
alpha_zotuT1_fungi.csv
 
 
alpha_zotuT2_fungi.csv
alpha_zotuT2_fungi.csv
 
 
alpha_zotuT3_fungi.csv
alpha_zotuT3_fungi.csv
 
 
alpha_zotu_survey1and2_fungi.csv
alpha_zotu_survey1and2_fungi.csv
 
 
alphadiversityFigure_OTUvZOTU.R
alphadiversityFigure_OTUvZOTU.R
 
 
bac_T1T2T3_meanrichnessbysite_zotu.csv
bac_T1T2T3_meanrichnessbysite_zotu.csv
 
 
bac_T1T2T3_site_all_otu.csv
bac_T1T2T3_site_all_otu.csv
 
 
correlationsforotuvzotu.csv
correlationsforotuvzotu.csv
 
 
fungi_T1T2T3_meanrichnessbysite_otu.csv
fungi_T1T2T3_meanrichnessbysite_otu.csv
 
 
fungi_T1T2T3_meanrichnessbysite_zotu.csv
fungi_T1T2T3_meanrichnessbysite_zotu.csv
 
 
getrowsums.R
getrowsums.R
 
 
gettaxondd.R
gettaxondd.R
 
 
otutab_inoculum_taxonomy_fungi.csv
otutab_inoculum_taxonomy_fungi.csv
 
 
richness_T1T2T3_ggplotfigures_bacteria_zotuvotu.R
richness_T1T2T3_ggplotfigures_bacteria_zotuvotu.R
 
 
richness_T1T2T3_ggplotfigures_fungi_zotuvotu.R
richness_T1T2T3_ggplotfigures_fungi_zotuvotu.R
 
 
zotutab_inoculum_tax_filtered_bacteria.csv
zotutab_inoculum_tax_filtered_bacteria.csv
 
 
zotutab_inoculum_taxonomy_fungi.csv
zotutab_inoculum_taxonomy_fungi.csv
 
 

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OTUvESV

This is to test the effects of using OTUs vs ESVs on microbial community analyses

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