v.1.0.4 on GRCh38

v1.0.4_GRCh38

Skip calculation of 50_BP_RULE and add NO_EXON_NUMBER flag if framesh…

Added option to turn off splice prediction

run_splice_predictions:0

v1.0.2

false to 0

Patch to allow skipping of LoF info

v1.0.1

adding option to skip adding lof_info

v1.0

Version of LOFTEE used in Karczewski et al., 2019

v0.3-beta

Splice module added, now filtering out splice variants in UTRs

v0.2.2-beta

Default is fixed to only apply filters and flags to putative LoFs, not all variants (now need to add apply_all:true to do so)

v0.2.1-beta

PhyloCSF data can now be read from MySQL instead of SQLite

v0.2-beta

Added conservation flags (PHYLOCSF_*), minor fixes to auxilliary scripts

v0.1.1-beta

Bug fixes to v0.1 (VEP Plugin and auxiliary scripts)