v.1.1.2

Wrap SCALE into SCALE_function, which will be very convenient for use in jupyter or python script.

v.1.1.1

1. Replace episcanpy.pp.select_var_feature with scanpy.pp.highly_variable_genes, the latter is more robust and also works for ATAC-seq.
2. Increase the default n_feature from 30,000 to 100,000.
3. Support for muon h5mu input with option -d filename.h5mu/atac
4. For benchmark using the same preprocessing hyperparameters as discribed in the paper by disabling the highly_variable_genes with option --n_feature -1, or use the latest version.

v1.1.0

Update dataset.py

v1.0.9

v1.0.9

1.0.4

v1.0.4