ome-zarr-py

Experimental implementation of images in Zarr files.

---

The napari plugin was generated with Cookiecutter along with @napari's cookiecutter-napari-plugin template.

Features

• TODO

Requirements

• TODO

Installation

Install developer mode:

cd ome-zarr-py
pip install -e .

Usage

Open images based on their ID in the Image Data Resource.

NB: Only select images are available currently.

For example ID = 9822151 or 6001240.

E.g. to open Image at http://idr.openmicroscopy.org/webclient/?show=image-6001240:

$ napari 'https://s3.embassy.ebi.ac.uk/idr/zarr/v0.1/6001240.zarr/'

OR in python:

import napari
with napari.gui_qt():
    viewer = napari.Viewer()
    viewer.open('https://s3.embassy.ebi.ac.uk/idr/zarr/v0.1/6001240.zarr/')

License

Distributed under the terms of the GNU GPL v3.0 license, "ome-zarr-py" is free and open source software