update tests

jodyphelan · May 10, 2024 · 8151bc8 · 8151bc8
1 parent e817be0
commit 8151bc8
Showing 1 changed file with 2 additions and 2 deletions.
diff --git a/tests/example_collate.txt b/tests/example_collate.txt
@@ -1,7 +1,7 @@
 sample	main_lineage	sub_lineage	spoligotype	drtype	target_median_depth	pct_reads_mapped	num_reads_mapped	num_dr_variants	num_other_variants	rifampicin	isoniazid	ethambutol	pyrazinamide	moxifloxacin	levofloxacin	bedaquiline	delamanid	pretomanid	linezolid	streptomycin	amikacin	kanamycin	capreomycin	clofazimine	ethionamide
 por5A_bcftools	lineage4	lineage4.3.4.2	-	MDR-TB	59.0	99.9	54238	4	24	rpoB p.Ser450Leu (1.00)	inhA c.-777C>T (1.00)	embB p.Met306Val (1.00)	pncA p.Val125Gly (1.00)	-	-	-	-	-	-	-	-	-	-	-	inhA c.-777C>T (1.00)
 por5A_freebayes	lineage4	lineage4.3.4.2	-	MDR-TB	59.0	99.9	54238	4	24	rpoB p.Ser450Leu (1.00)	inhA c.-777C>T (1.00)	embB p.Met306Val (1.00)	pncA p.Val125Gly (1.00)	-	-	-	-	-	-	-	-	-	-	-	inhA c.-777C>T (1.00)
-por5A_gatk	lineage4	lineage4.3.4.2	-	MDR-TB	59.0	99.9	54238	4	28	rpoB p.Ser450Leu (1.00)	inhA c.-777C>T (1.00)	embB p.Met306Val (1.00)	pncA p.Val125Gly (1.00)	-	-	-	-	-	-	-	-	-	-	-	inhA c.-777C>T (1.00)
+por5A_gatk	lineage4	lineage4.3.4.2	-	MDR-TB	59.0	99.9	54238	4	24	rpoB p.Ser450Leu (1.00)	inhA c.-777C>T (1.00)	embB p.Met306Val (1.00)	pncA p.Val125Gly (1.00)	-	-	-	-	-	-	-	-	-	-	-	inhA c.-777C>T (1.00)
 por5A_lofreq	lineage4	lineage4.3.4.2	-	MDR-TB	59.0	99.9	54238	4	23	rpoB p.Ser450Leu (1.00)	inhA c.-777C>T (1.00)	embB p.Met306Val (1.00)	pncA p.Val125Gly (1.00)	-	-	-	-	-	-	-	-	-	-	-	inhA c.-777C>T (1.00)
-por5A_pilon	lineage4	lineage4.3.4.2	-	MDR-TB	59.0	99.9	54238	4	25	rpoB p.Ser450Leu (1.00)	inhA c.-777C>T (1.00)	embB p.Met306Val (1.00)	pncA p.Val125Gly (1.00)	-	-	-	-	-	-	-	-	-	-	-	inhA c.-777C>T (1.00)
+por5A_pilon	lineage4	lineage4.3.4.2	-	MDR-TB	59.0	99.9	54238	4	24	rpoB p.Ser450Leu (1.00)	inhA c.-777C>T (1.00)	embB p.Met306Val (1.00)	pncA p.Val125Gly (1.00)	-	-	-	-	-	-	-	-	-	-	-	inhA c.-777C>T (1.00)
 por5_vcf	lineage4	lineage4.3.4.2	-	MDR-TB				4	24	rpoB p.Ser450Leu (1.00)	inhA c.-777C>T (1.00)	embB p.Met306Val (1.00)	pncA p.Val125Gly (1.00)	-	-	-	-	-	-	-	-	-	-	-	inhA c.-777C>T (1.00)