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Develop -> Master #131

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Develop -> Master #131

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Commits on Jun 13, 2024

  1. Create docker-publish.yml

    @bio-boris
    bio-boris committed Jun 13, 2024
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  2. Update docker-publish.yml

    @bio-boris
    bio-boris committed Jun 13, 2024
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Commits on Jun 21, 2024

  1. Merge pull request #130 from jgi-kbase/docker-publish 

    Create docker-publish.yml
    @bio-boris
    bio-boris committed Jun 21, 2024
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Commits on Jun 25, 2024

  1. DEVOPS-1957 Update GHA (#132) 

    * Update docker-publish.yml
    @bio-boris
    bio-boris committed Jun 25, 2024
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Commits on Jul 2, 2024

  1. Add github workflows (#129)

    @Xiangs18
    Xiangs18 committed Jul 2, 2024
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  2. fix flake8 by black

    @Xiangs18
    Xiangs18 committed Jul 2, 2024
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  3. enable flake8

    @Xiangs18
    Xiangs18 committed Jul 2, 2024
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Commits on Jul 3, 2024

  1. mannual fix

    @Xiangs18
    Xiangs18 committed Jul 3, 2024
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  2. revert # noqa: E222 @IgnorePep8 && remove # @unusedvariable

    @Xiangs18
    Xiangs18 committed Jul 3, 2024
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  3. Merge pull request #135 from jgi-kbase/dev-fix_flake_mypy_bandit 

    Fix flake8
    @Xiangs18
    Xiangs18 committed Jul 3, 2024
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Commits on Jul 8, 2024

  1. fix mypy

    @Xiangs18
    Xiangs18 committed Jul 8, 2024
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  2. fix E261 at least two spaces before inline comment

    @Xiangs18
    Xiangs18 committed Jul 8, 2024
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  3. remove None

    @Xiangs18
    Xiangs18 committed Jul 8, 2024
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  4. add # type: ignore[attr-defined]

    @Xiangs18
    Xiangs18 committed Jul 8, 2024
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  5. Merge pull request #136 from jgi-kbase/dev-fix_mypy 

    Fix mypy
    @Xiangs18
    Xiangs18 committed Jul 8, 2024
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  6. enable bandit

    @Xiangs18
    Xiangs18 committed Jul 8, 2024
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Commits on Jul 9, 2024

  1. add annotations to fix B105:hardcoded_password_string

    @Xiangs18
    Xiangs18 committed Jul 9, 2024
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  2. ignore Requests call without timeout

    @Xiangs18
    Xiangs18 committed Jul 9, 2024
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  3. Merge pull request #137 from jgi-kbase/dev-fix_bandit 

    Fix bandit
    @Xiangs18
    Xiangs18 committed Jul 9, 2024
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Commits on Jul 10, 2024

  1. add Pipfile and Pipfile.lock

    @Xiangs18
    Xiangs18 committed Jul 10, 2024
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  2. delete requirements.txt files

    @Xiangs18
    Xiangs18 committed Jul 10, 2024
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  3. update test.yaml and Dockerfile

    @Xiangs18
    Xiangs18 committed Jul 10, 2024
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Commits on Jul 11, 2024

  1. update docker-compose file

    @Xiangs18
    Xiangs18 committed Jul 11, 2024
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  2. fix mongo-host

    @Xiangs18
    Xiangs18 committed Jul 11, 2024
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Commits on Jul 12, 2024

  1. add mongo_host env var in docker-compose

    @Xiangs18
    Xiangs18 committed Jul 12, 2024
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  2. Merge pull request #139 from jgi-kbase/dev-add_pipfile 

    Add Pipfile and update docker-compose file
    @Xiangs18
    Xiangs18 committed Jul 12, 2024
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  3. add mongo7 into GHA workflows

    @Xiangs18
    Xiangs18 committed Jul 12, 2024
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  4. update pymango version

    @Xiangs18
    Xiangs18 committed Jul 12, 2024
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  5. add type annotation for client

    @Xiangs18
    Xiangs18 committed Jul 12, 2024
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  6. use is for compare types

    @Xiangs18
    Xiangs18 committed Jul 12, 2024
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  7. update mongo_controller.py

    @Xiangs18
    Xiangs18 committed Jul 12, 2024
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  8. fix test_startup_and_check_config_doc

    @Xiangs18
    Xiangs18 committed Jul 12, 2024
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  9. add missing len()

    @Xiangs18
    Xiangs18 committed Jul 12, 2024
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  10. fix count

    @Xiangs18
    Xiangs18 committed Jul 12, 2024
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  11. remove namespace from index info

    @Xiangs18
    Xiangs18 committed Jul 12, 2024
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  12. remove ns in test_index_mappings

    @Xiangs18
    Xiangs18 committed Jul 12, 2024
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  13. update remove_ns_from_index_info function

    @Xiangs18
    Xiangs18 committed Jul 12, 2024
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  14. error message for mongo3

    @Xiangs18
    Xiangs18 committed Jul 12, 2024
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  15. update error message

    @Xiangs18
    Xiangs18 committed Jul 12, 2024
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  16. fix mypy complaint

    @Xiangs18
    Xiangs18 committed Jul 12, 2024
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  17. add mypy ignore

    @Xiangs18
    Xiangs18 committed Jul 12, 2024
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Commits on Jul 16, 2024

  1. fix log

    @Xiangs18
    Xiangs18 committed Jul 16, 2024
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Commits on Jul 17, 2024

  1. fix regex and semver import

    @Xiangs18
    Xiangs18 committed Jul 17, 2024
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  2. fix sver

    @Xiangs18
    Xiangs18 committed Jul 17, 2024
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  3. fix space

    @Xiangs18
    Xiangs18 committed Jul 17, 2024
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  4. remove semver assignment

    @Xiangs18
    Xiangs18 committed Jul 17, 2024
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  5. update regex error message

    @Xiangs18
    Xiangs18 committed Jul 17, 2024
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  6. fix error message

    @Xiangs18
    Xiangs18 committed Jul 17, 2024
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  7. update error message

    @Xiangs18
    Xiangs18 committed Jul 17, 2024
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  8. fix semver parser

    @Xiangs18
    Xiangs18 committed Jul 17, 2024
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  9. add test_log_formatter_with_no_test_request_context

    @Xiangs18
    Xiangs18 committed Jul 17, 2024
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  10. Merge pull request #140 from jgi-kbase/dev-mongo7_upgrade 

    Mongo7 upgrade
    @Xiangs18
    Xiangs18 committed Jul 17, 2024
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  11. add retryWrites param in cfg

    @Xiangs18
    Xiangs18 committed Jul 17, 2024
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  12. Merge branch 'develop' into dev-retrywrites

    @Xiangs18
    Xiangs18 committed Jul 17, 2024
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Commits on Jul 18, 2024

  1. add retrywrites into KbaseConfig and test

    @Xiangs18
    Xiangs18 committed Jul 18, 2024
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  2. fix flake8

    @Xiangs18
    Xiangs18 committed Jul 18, 2024
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  3. Merge pull request #141 from jgi-kbase/dev-retrywrites 

    Add retrywrites param
    @Xiangs18
    Xiangs18 committed Jul 18, 2024
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  4. add id mapping container test

    @Xiangs18
    Xiangs18 committed Jul 18, 2024
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  5. fix typo and add type hint

    @Xiangs18
    Xiangs18 committed Jul 18, 2024
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  6. fix comment

    @Xiangs18
    Xiangs18 committed Jul 18, 2024
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  7. fix redirection unexpected

    @Xiangs18
    Xiangs18 committed Jul 18, 2024
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  8. finish

    @Xiangs18
    Xiangs18 committed Jul 18, 2024
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  9. fix service name

    @Xiangs18
    Xiangs18 committed Jul 18, 2024
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  10. address comments

    @Xiangs18
    Xiangs18 committed Jul 18, 2024
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  11. Merge pull request #142 from jgi-kbase/dev-container_test 

    id mapping container test
    @Xiangs18
    Xiangs18 committed Jul 18, 2024
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  12. update readme && release notes

    @Xiangs18
    Xiangs18 committed Jul 18, 2024
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Commits on Jul 19, 2024

  1. fix python version and cmd in readme && update release notes

    @Xiangs18
    Xiangs18 committed Jul 19, 2024
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  2. change python version to 3.9 in Pipfile

    @Xiangs18
    Xiangs18 committed Jul 19, 2024
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  3. Merge pull request #146 from jgi-kbase/dev-update_readme_release_notes 

    update readme and release notes
    @Xiangs18
    Xiangs18 committed Jul 19, 2024
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