GitHub - jeffalstott/Helix: Tools for the NIH's Helix and Biowulf system

jeffalstott / Helix Public

Notifications You must be signed in to change notification settings
Fork 3
Star 5

Tools for the NIH's Helix and Biowulf system

Notifications

Name		Name	Last commit message	Last commit date
Latest commit History 23 Commits
helix		helix
.gitignore		.gitignore
README		README
setup.cfg		setup.cfg
setup.py		setup.py

Repository files navigation

Helix is a Python package for working with the NIH's Helix system and Biowulf cluster. 

There are two main functionalities available:

1. submitting swarm jobs (Swarm class)
2a. submitting qsub jobs (QSub)
2b. submitting qsub jobs in blocking mode (QSubBlocking)

Installing

After checking out the distribution, simply move into the top-level directory and type:

python setup.py install

Usage:

>>> import helix
>>> dir(helix)
....