ANIMA bin

This wraps ANIMA into a pip-installable package, so that these tools can be proper dependencies of python packages.

See the ANIMA docs for more information.

Installation

pip install ivadomed-anima-bin

Usage

Just run anima$WHATEVER, for example:

$ animaMaskImage --help

USAGE: 

   animaMaskImage  -m <mask file> -o <output image> -i <input image> [--]
                   [--version] [-h]


Where: 

   -m <mask file>,  --maskfile <mask file>
     (required)  mask file

   -o <output image>,  --outputfile <output image>
     (required)  output image

   -i <input image>,  --inputfile <input image>
     (required)  Input image

   --,  --ignore_rest
     Ignores the rest of the labeled arguments following this flag.

   --version
     Displays version information and exits.

   -h,  --help
     Displays usage information and exits.


   INRIA / IRISA - VisAGeS/Empenn Team