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@intbio-ncl

Integrative bioinformatics @ NCL

Code repository for research work of the integrative bioinformatics research team in ICOS at Newcastle University

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  1. shortbol shortbol Public

    ShortBOL - A abstract language implementing the SBOL Data Model.

    Python 3 1

  2. BiomationScripterLib BiomationScripterLib Public

    A Python library to assist with scripting bio-automation protocols

    Python 3

  3. genet2 genet2 Public

    Web Application for the integration, enhancement and representation of Synthetic Biology centric data.

    Python 3

  4. seq-mdp seq-mdp Public

    Solve the Maximum Diversity Problem for protein sequence sampling.

    Python 2 1

  5. net_vis_syn_bio net_vis_syn_bio Public

    Network Visualisation Synthetic Biology

    Python 2

  6. chimera_evolve chimera_evolve Public

    Design of CDS for 1+ organisms by optimisation of the Chimera Average Repetitive Substring (ARS) metric.

    Rust 2

Repositories

Showing 10 of 16 repositories
  • Probablistic-Functional-Integrated-Networks Public

    PhD Project

    intbio-ncl/Probablistic-Functional-Integrated-Networks’s past year of commit activity
    Python 0 0 0 0 Updated Feb 8, 2024
  • seq-mdp Public

    Solve the Maximum Diversity Problem for protein sequence sampling.

    intbio-ncl/seq-mdp’s past year of commit activity
    Python 2 1 1 0 Updated Oct 9, 2023
  • BiomationScripterLib Public

    A Python library to assist with scripting bio-automation protocols

    intbio-ncl/BiomationScripterLib’s past year of commit activity
    Python 3 MIT 0 13 (3 issues need help) 1 Updated Sep 2, 2023
  • genet2 Public

    Web Application for the integration, enhancement and representation of Synthetic Biology centric data.

    intbio-ncl/genet2’s past year of commit activity
    Python 3 MIT 0 5 0 Updated Mar 22, 2023
  • csc8221-synbioautomation Public

    course scripts for synbio automation course

    intbio-ncl/csc8221-synbioautomation’s past year of commit activity
    Python 0 0 0 0 Updated Jan 23, 2023
  • ROTc Public

    Recursive Orthogonal Threshold classifier.

    intbio-ncl/ROTc’s past year of commit activity
    C++ 0 0 1 0 Updated Jan 10, 2023
  • net_vis_syn_bio Public

    Network Visualisation Synthetic Biology

    intbio-ncl/net_vis_syn_bio’s past year of commit activity
    Python 2 MIT 0 4 0 Updated Mar 16, 2022
  • sbol_graph_visualiser Public

    A Tool to visualise SBOL in graphical views.

    intbio-ncl/sbol_graph_visualiser’s past year of commit activity
    Python 0 0 3 0 Updated Jul 21, 2021
  • DNN_Carbapenem_Resistance Public

    Prediction of future carbapanem resistance variants

    intbio-ncl/DNN_Carbapenem_Resistance’s past year of commit activity
    Python 0 0 0 0 Updated Jun 7, 2021
  • seq-sublight Public

    Highlight subsets of protein sequences from a larger superset on a Sequence Similarity Network.

    intbio-ncl/seq-sublight’s past year of commit activity
    Python 0 0 0 0 Updated May 16, 2021
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