2022-Best-Practices-Infant-MEG

This repository contains a sample infant dataset analysis script. The corresponding data files (to be downloaded to the same folder as pipeline.py) can be obtained from OSF.io:

• ct_sparse.fif
• sss_cal.dat
• fc_12mo_102_raw.fif
• fc_12mo_102_erm_raw.fif

This script requrires:

• MNE-Python
• h5io
• mnefun

If you install Anaconda, you can get all dependencies with something like:

(base) $ conda create -n isolated -c conda-forge mne h5io
(isolated) $ conda activate isolated
(isolated) $ pip install https://github.com/LABSN/mnefun/zipball/dde46d7f58df8eccc55e3c56370c0bc27c7d1653

Then running python -i pipeline.py should work!

We plan to incorporate the mnefun functions and the workflow from thes script into the MNE-Python and MNE-BIDS-Pipeline packages, see:

https://chanzuckerberg.com/eoss/proposals/building-pediatric-and-clinical-data-pipelines-for-mne-python/