Merge pull request marekrams#12 from marekrams/update-reference

Update reference
iitis · Sep 24, 2021 · 41a2294 · 41a2294
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diff --git a/README.md b/README.md
@@ -1,7 +1,8 @@
 Tensor network approximate contractions for optimalization (tnac4o)
 ============
-M. M. Rams, M. Mohseni and B. Gardas, "Spin-glass droplets learning and approximate optimization with tensor networks",
-https://arxiv.org/abs/1811.06518
+Accompanying article:
+M. M. Rams, M. Mohseni, D. Eppens, K. Jałowiecki and B. Gardas, 
+"Approximate optimization, sampling and spin-glass droplets discovery with tensor networks", [Phys. Rev. E 104, 025308 (2021)](https://doi.org/10.1103/PhysRevE.104.025308), [arXiv:1811.06518](https://arxiv.org/abs/1811.06518)
 
 Documentation: https://tnac4o.readthedocs.io/en/latest/
 
@@ -51,7 +52,13 @@ Loading the solution from the previous script, and reconstructing the low-energy
    python e04_load_spectrum_droplet_instances.py -L 128 -ins 1
    ```
 
-Finally, for a minimal example of a problem defined as a Random Markov Field see:
+A minimal example of a problem defined as a Random Markov Field see:
    ```
    python e05_minimal_RMF.py
    ```
+
+Script counting ground state degeneracy for a class of discrete instances in the paper (Fig. 4):
+   ```
+   python e06_search_gs_degeneracy_J124.py
+   ```
+
diff --git a/doc/source/aux.rst b/doc/source/aux.rst
@@ -1,7 +1,7 @@
 aux
 ===
 
-.. automodule:: tnac4o.aux
+.. automodule:: tnac4o.auxx
    :members:
    :undoc-members:
    :show-inheritance:
diff --git a/doc/source/index.rst b/doc/source/index.rst
@@ -10,8 +10,8 @@ Welcome to tnac4o's documentation!
 It employs tensor network contractions to calculate marginal probabilities and identify the most probable states according to Gibbs distribution.
 By identifying spin-glass droplets, it allows reconstructing the low-energy spectrum of the model. It can also be used for Random Markov Fields defined on 2d lattice.
 
-**tnac4o** is based on the paper M. M. Rams, M. Mohseni and B. Gardas, *"Spin-glass droplets learning and approximate optimization with tensor networks"*,
-https://arxiv.org/abs/1811.06518
+**tnac4o** is based on the paper M. M. Rams, M. Mohseni, D. Eppens, K. Jałowiecki and B. Gardas, 
+*"Approximate optimization, sampling and spin-glass droplets discovery with tensor networks"*, `Phys. Rev. E 104, 025308 (2021) <https://doi.org/10.1103/PhysRevE.104.025308>`_, `arXiv:1811.06518 <https://arxiv.org/abs/1811.06518>`_
 
 .. toctree::
    :maxdepth: 2

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diff --git a/...ances/chimera1024_spinglass_power/089.txt → ...ances/chimera1152_spinglass_power/089.txt b/...ances/chimera1024_spinglass_power/089.txt → ...ances/chimera1152_spinglass_power/089.txt
diff --git a/...ances/chimera1024_spinglass_power/090.txt → ...ances/chimera1152_spinglass_power/090.txt b/...ances/chimera1024_spinglass_power/090.txt → ...ances/chimera1152_spinglass_power/090.txt
diff --git a/...ances/chimera1024_spinglass_power/091.txt → ...ances/chimera1152_spinglass_power/091.txt b/...ances/chimera1024_spinglass_power/091.txt → ...ances/chimera1152_spinglass_power/091.txt
diff --git a/...ances/chimera1024_spinglass_power/092.txt → ...ances/chimera1152_spinglass_power/092.txt b/...ances/chimera1024_spinglass_power/092.txt → ...ances/chimera1152_spinglass_power/092.txt
diff --git a/...ances/chimera1024_spinglass_power/093.txt → ...ances/chimera1152_spinglass_power/093.txt b/...ances/chimera1024_spinglass_power/093.txt → ...ances/chimera1152_spinglass_power/093.txt
diff --git a/...ances/chimera1024_spinglass_power/094.txt → ...ances/chimera1152_spinglass_power/094.txt b/...ances/chimera1024_spinglass_power/094.txt → ...ances/chimera1152_spinglass_power/094.txt
diff --git a/...ances/chimera1024_spinglass_power/095.txt → ...ances/chimera1152_spinglass_power/095.txt b/...ances/chimera1024_spinglass_power/095.txt → ...ances/chimera1152_spinglass_power/095.txt
diff --git a/...ances/chimera1024_spinglass_power/096.txt → ...ances/chimera1152_spinglass_power/096.txt b/...ances/chimera1024_spinglass_power/096.txt → ...ances/chimera1152_spinglass_power/096.txt
diff --git a/...ances/chimera1024_spinglass_power/097.txt → ...ances/chimera1152_spinglass_power/097.txt b/...ances/chimera1024_spinglass_power/097.txt → ...ances/chimera1152_spinglass_power/097.txt
diff --git a/...ances/chimera1024_spinglass_power/098.txt → ...ances/chimera1152_spinglass_power/098.txt b/...ances/chimera1024_spinglass_power/098.txt → ...ances/chimera1152_spinglass_power/098.txt
diff --git a/...ances/chimera1024_spinglass_power/099.txt → ...ances/chimera1152_spinglass_power/099.txt b/...ances/chimera1024_spinglass_power/099.txt → ...ances/chimera1152_spinglass_power/099.txt
diff --git a/...ances/chimera1024_spinglass_power/100.txt → ...ances/chimera1152_spinglass_power/100.txt b/...ances/chimera1024_spinglass_power/100.txt → ...ances/chimera1152_spinglass_power/100.txt
diff --git a/...24_spinglass_power/groundstates_otn2d.txt → ...52_spinglass_power/groundstates_otn2d.txt b/...24_spinglass_power/groundstates_otn2d.txt → ...52_spinglass_power/groundstates_otn2d.txt
diff --git a/tnac4o/__init__.py b/tnac4o/__init__.py
@@ -1,2 +1,2 @@
 from .tnac4o import tnac4o, load
-from .aux import load_Jij, round_Jij, minus_Jij, Jij_f2p, energy_Jij, energy_RMF
+from .auxx import load_Jij, round_Jij, minus_Jij, Jij_f2p, energy_Jij, energy_RMF
diff --git a/tnac4o/aux.py → tnac4o/auxx.py b/tnac4o/aux.py → tnac4o/auxx.py