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@iAMB-RWTH-Aachen

iAMB

Institute of Applied Microbiology - RWTH Aachen University

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  1. Opol-GSMM Opol-GSMM Public

    Genome scale metabolic model for Ogataea polymorpha NCYC495.

    HTML 2

  2. PAModelpy PAModelpy Public

    Repository for source code of the PAModelpy package

    Jupyter Notebook 2

  3. Ustilago_maydis-GEM Ustilago_maydis-GEM Public

    The genome scale metabolic model iUma22 for Ustilago maydis

    HTML 1 1

  4. Tutorial_GEM_and-_FBA Tutorial_GEM_and-_FBA Public

    Tutorial for simulation of constraint based models with CobraPy.

    Jupyter Notebook 1 1

  5. PathwayToolsAnnotationParser PathwayToolsAnnotationParser Public

    Matlab script that parses files exported from Pathway Tools for common annotations in order to complete models created with the COBRA Toolbox. This script finds those annotations that the COBRA par…

    M

  6. BioLabSim BioLabSim Public

    Jupyter Notebook

Repositories

Showing 9 of 9 repositories
  • PAModelpy Public

    Repository for source code of the PAModelpy package

    iAMB-RWTH-Aachen/PAModelpy’s past year of commit activity
    Jupyter Notebook 2 MIT 0 0 0 Updated Jul 23, 2024
  • BioLabSim Public
    iAMB-RWTH-Aachen/BioLabSim’s past year of commit activity
    Jupyter Notebook 0 MIT 0 0 3 Updated Apr 12, 2024
  • Ustilago_maydis-GEM Public

    The genome scale metabolic model iUma22 for Ustilago maydis

    iAMB-RWTH-Aachen/Ustilago_maydis-GEM’s past year of commit activity
    HTML 1 CC-BY-4.0 1 0 0 Updated Apr 10, 2024
  • Opol-GSMM Public

    Genome scale metabolic model for Ogataea polymorpha NCYC495.

    iAMB-RWTH-Aachen/Opol-GSMM’s past year of commit activity
    HTML 2 0 0 0 Updated Nov 29, 2023
  • yeast-GEM-iAMBvolatiles Public Forked from SysBioChalmers/yeast-GEM

    The consensus GEM for Saccharomyces cerevisiae. Added with volatiles from the iAMB.

    iAMB-RWTH-Aachen/yeast-GEM-iAMBvolatiles’s past year of commit activity
    MATLAB 0 CC-BY-4.0 44 0 0 Updated May 25, 2023
  • RWTH-QMB1 Public
    iAMB-RWTH-Aachen/RWTH-QMB1’s past year of commit activity
    Jupyter Notebook 0 0 0 1 Updated Jun 22, 2022
  • Exp2Ipynb Public

    Exp2Ipynb is a collection of Python Jupyter Notebooks for the analysis of gene expression. The input is a library of sequences with equal length mapped to associated expression strength.

    iAMB-RWTH-Aachen/Exp2Ipynb’s past year of commit activity
    TeX 0 GPL-3.0 0 0 0 Updated Jun 9, 2022
  • Tutorial_GEM_and-_FBA Public

    Tutorial for simulation of constraint based models with CobraPy.

    iAMB-RWTH-Aachen/Tutorial_GEM_and-_FBA’s past year of commit activity
    Jupyter Notebook 1 1 0 0 Updated Nov 11, 2020
  • PathwayToolsAnnotationParser Public

    Matlab script that parses files exported from Pathway Tools for common annotations in order to complete models created with the COBRA Toolbox. This script finds those annotations that the COBRA parses misses. Before invoking the script, make sure to have imported your model of interest from a Pathway Tools SMBL file with COBRA first.

    iAMB-RWTH-Aachen/PathwayToolsAnnotationParser’s past year of commit activity
    M 0 0 0 0 Updated Aug 1, 2014

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